ADHDgene Database

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Type:

Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Chromosome Search Result

Search by: Chr = chr13

SNP: 561
CNV: 12
Gene: 77
Region: 5

SNP (count: 561)

Literature-origin SNPs (count: 45)

rs_ID	Location	Functional Annotation	No. of Studies (significant/non-significant/trend)
rs6311	Chr13:47471478(Fwd)	upstream_gene_variant	4(0/4/0)
rs6313	Chr13:47469940(Fwd)	intron_variant; synonymous_variant	4(0/4/0)
rs6314	Chr13:47409034(Fwd)	missense_variant	4(0/4/0)
rs1539549	Chr13:36451881(Fwd)	intron_variant	2(0/2/0)
rs17722514	Chr13:90713945(Fwd)	intron_variant; nc_transcript_variant	2(0/2/0)
rs6561333	Chr13:47420312(Fwd)	feature_truncation; intron_variant	2(2/0/0)
rs1370072	Chr13:55841938(Fwd)		1(0/0/1)
rs790531	Chr13:50725514(Fwd)	intron_variant; nc_transcript_variant	1(0/0/1)
rs7984422	Chr13:92808689(Fwd)	intron_variant	1(0/0/1)
rs7984966	Chr13:47429446(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant	1(1/0/0)
rs7989807	Chr13:36625089(Fwd)	intron_variant	1(1/0/0)
rs7990263	Chr13:36461216(Fwd)	intron_variant	1(0/1/0)
rs7992643	Chr13:100555038(Fwd)		1(0/0/1)
rs7995215	Chr13:94408506(Fwd)	intron_variant	1(0/0/1)
rs7997012	Chr13:47411985(Fwd)	intron_variant	1(1/0/0)
rs7999483	Chr13:36353437(Fwd)	intron_variant	1(0/1/0)
rs10492555	Chr13:36709109(Fwd)	upstream_gene_variant	1(0/1/0)
rs10507435	Chr13:36440996(Fwd)	intron_variant	1(1/0/0)
rs2770296	Chr13:47440560(Fwd)	intron_variant	1(1/0/0)
rs9316233	Chr13:47433355(Fwd)	downstream_gene_variant; intron_variant	1(1/0/0)
rs9525580	Chr13:42720699(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs17079773	Chr13:24598384(Fwd)	intron_variant; nc_transcript_variant	1(0/0/1)
rs9525584	Chr13:42734894(Fwd)	intron_variant; nc_transcript_variant	1(0/1/0)
rs9534495	Chr13:47429228(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant	1(1/0/0)
rs9545297	Chr13:36341668(Fwd)	downstream_gene_variant	1(0/1/0)
rs9545424	Chr13:36383264(Fwd)	intron_variant; upstream_gene_variant	1(0/1/0)
rs1750921	Chr13:36452069(Fwd)	intron_variant	1(0/1/0)
rs347405	Chr13:42790179(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs994856	Chr13:42708451(Fwd)	intron_variant; upstream_gene_variant	1(1/0/0)
rs1170101	Chr13:42776055(Fwd)	intron_variant; nc_transcript_variant	1(0/1/0)
rs1170169	Chr13:42697807(Fwd)	intron_variant	1(1/0/0)
rs1170191	Chr13:42675493(Fwd)	intron_variant	1(0/1/0)
rs6561332	Chr13:47419820(Fwd)	intron_variant	1(1/0/0)
rs6561686	Chr13:53289094(Fwd)	intron_variant	1(0/1/0)
rs1923886	Chr13:47423291(Fwd)	intron_variant; upstream_gene_variant	1(1/0/0)
rs1926452	Chr13:36444937(Fwd)	intron_variant	1(0/1/0)
rs2051090	Chr13:36454193(Fwd)	intron_variant	1(0/1/0)
rs1278776	Chr13:113520362(Fwd)	NMD_transcript_variant; intron_variant	1(0/1/0)
rs2148004	Chr13:42697839(Fwd)	intron_variant	1(0/1/0)
rs12874830	Chr13:36572040(Fwd)	intron_variant	1(1/0/0)
rs2224721	Chr13:47432154(Fwd)	downstream_gene_variant; intron_variant	1(1/0/0)
rs7322347	Chr13:47410103(Fwd)	intron_variant	1(1/0/0)
rs7327771	Chr13:36679512(Fwd)	intron_variant	1(0/1/0)
rs4238186	Chr13:19690836(Fwd)		1(0/0/1)
rs1328684	Chr13:47466230(Fwd)	intron_variant	1(1/0/0)

LD-proxies (count: 516)

rs_ID	Location	Functional Annotation
rs3118195	Chr13:55703495(Fwd)
rs7992165	Chr13:53269128(Fwd)
rs3120890	Chr13:55711560(Fwd)
rs1370082	Chr13:53271091(Fwd)
rs3120855	Chr13:55725094(Fwd)
rs7994651	Chr13:53272906(Fwd)	downstream_gene_variant
rs2316648	Chr13:55730693(Fwd)
rs1436724	Chr13:53278680(Fwd)	intron_variant
rs1582147	Chr13:55730924(Fwd)
rs1578052	Chr13:55730945(Fwd)
rs1170109	Chr13:42779694(Fwd)	intron_variant; nc_transcript_variant
rs1578051	Chr13:55731261(Fwd)
rs9536136	Chr13:53134888(Fwd)	intron_variant; nc_transcript_variant
rs585206	Chr13:42689853(Fwd)	intron_variant
rs3120866	Chr13:55738010(Fwd)
rs2575965	Chr13:53153563(Fwd)	nc_transcript_variant; non_coding_exon_variant
rs2767389	Chr13:42681678(Fwd)	intron_variant
rs3120867	Chr13:55739005(Fwd)
rs9536153	Chr13:53153950(Fwd)	intron_variant; nc_transcript_variant
rs686810	Chr13:42686172(Fwd)	intron_variant
rs3120868	Chr13:55739306(Fwd)
rs1170171	Chr13:42689717(Fwd)	intron_variant
rs2316642	Chr13:55742302(Fwd)
rs9536184	Chr13:53173587(Fwd)
rs1170155	Chr13:42702711(Fwd)	intron_variant
rs3120874	Chr13:55743022(Fwd)
rs9536189	Chr13:53180545(Fwd)
rs912875	Chr13:42677238(Fwd)	intron_variant
rs3120881	Chr13:55758138(Fwd)
rs9536195	Chr13:53183300(Fwd)
rs7981733	Chr13:42690060(Fwd)	intron_variant
rs7490613	Chr13:55766622(Fwd)
rs9526957	Chr13:53191674(Fwd)	5_prime_UTR_variant; upstream_gene_variant
rs9315891	Chr13:42699079(Fwd)	intron_variant
rs9537001	Chr13:55771716(Fwd)
rs662582	Chr13:53194404(Fwd)	intron_variant; nc_transcript_variant
rs9533003	Chr13:42699604(Fwd)	intron_variant
rs4344605	Chr13:55782265(Fwd)
rs676306	Chr13:53196163(Fwd)	5_prime_UTR_variant; nc_transcript_variant; non_coding_exon_variant
rs1170190	Chr13:42675667(Fwd)	intron_variant
rs2316652	Chr13:55784500(Fwd)
rs630892	Chr13:53196882(Fwd)	intron_variant; nc_transcript_variant
rs1170188	Chr13:42678971(Fwd)	intron_variant
rs7336884	Chr13:55786298(Fwd)
rs2760780	Chr13:53198877(Fwd)	intron_variant; nc_transcript_variant
rs1170187	Chr13:42679835(Fwd)	intron_variant
rs9316768	Chr13:55786742(Fwd)
rs9526958	Chr13:53199043(Fwd)	intron_variant; nc_transcript_variant
rs685951	Chr13:42686359(Fwd)	intron_variant
rs9537008	Chr13:55788945(Fwd)
rs615509	Chr13:53200538(Fwd)	intron_variant; nc_transcript_variant
rs1170173	Chr13:42688615(Fwd)	intron_variant
rs9316770	Chr13:55791400(Fwd)
rs603070	Chr13:53201050(Fwd)	intron_variant; nc_transcript_variant
rs1177637	Chr13:42692823(Fwd)	intron_variant
rs7998111	Chr13:55792520(Fwd)
rs617660	Chr13:53203389(Fwd)	5_prime_UTR_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant
rs670676	Chr13:42701739(Fwd)	intron_variant
rs9537010	Chr13:55792908(Fwd)
rs693991	Chr13:53203671(Fwd)	intron_variant; nc_transcript_variant
rs1170158	Chr13:42701941(Fwd)	intron_variant
rs9537011	Chr13:55792940(Fwd)
rs646498	Chr13:53203834(Fwd)	intron_variant; nc_transcript_variant
rs7984523	Chr13:42678357(Fwd)	intron_variant
rs7990319	Chr13:55796851(Fwd)
rs186900	Chr13:53206713(Fwd)	intron_variant; nc_transcript_variant
rs1750017	Chr13:42704451(Fwd)	intron_variant
rs9537018	Chr13:55799624(Fwd)
rs342772	Chr13:53208140(Fwd)	intron_variant; nc_transcript_variant
rs1170178	Chr13:42705808(Fwd)	intron_variant
rs9569240	Chr13:55800708(Fwd)
rs342769	Chr13:53208747(Fwd)	intron_variant; nc_transcript_variant
rs682573	Chr13:42708655(Fwd)	intron_variant; upstream_gene_variant
rs2788704	Chr13:55801775(Fwd)
rs237106	Chr13:53209432(Fwd)	intron_variant; nc_transcript_variant
rs12585075	Chr13:42711224(Fwd)	intron_variant; upstream_gene_variant
rs2575898	Chr13:55806533(Fwd)
rs682343	Chr13:53211352(Fwd)	intron_variant; nc_transcript_variant
rs12876965	Chr13:42712741(Fwd)	intron_variant; upstream_gene_variant
rs1416332	Chr13:55807687(Fwd)
rs1925135	Chr13:53214717(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs17645393	Chr13:42734840(Fwd)	intron_variant; nc_transcript_variant
rs2575906	Chr13:55808127(Fwd)
rs342777	Chr13:53215719(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs12865430	Chr13:42736013(Fwd)	intron_variant; nc_transcript_variant
rs2575907	Chr13:55808339(Fwd)
rs342774	Chr13:53218248(Fwd)	downstream_gene_variant
rs10492441	Chr13:42762085(Fwd)	intron_variant; nc_transcript_variant
rs9316772	Chr13:55811409(Fwd)
rs11148262	Chr13:53219557(Fwd)	downstream_gene_variant
rs10492439	Chr13:42762316(Fwd)	intron_variant; nc_transcript_variant
rs9527340	Chr13:55813993(Fwd)
rs9536216	Chr13:53221376(Fwd)	downstream_gene_variant
rs12870816	Chr13:42767252(Fwd)	intron_variant; nc_transcript_variant
rs6561336	Chr13:47448060(Fwd)	intron_variant
rs9537036	Chr13:55827231(Fwd)
rs7319451	Chr13:53222464(Fwd)	downstream_gene_variant; upstream_gene_variant
rs12870823	Chr13:42767261(Fwd)	intron_variant; nc_transcript_variant
rs11841433	Chr13:47434733(Fwd)	downstream_gene_variant; intron_variant
rs1583560	Chr13:55836303(Fwd)
rs2770297	Chr13:47446665(Fwd)	intron_variant
rs6561673	Chr13:53226444(Fwd)	upstream_gene_variant
rs12585267	Chr13:42759971(Fwd)	intron_variant; nc_transcript_variant
rs1928042	Chr13:47437216(Fwd)	intron_variant
rs9527354	Chr13:55841805(Fwd)
rs2770298	Chr13:47446847(Fwd)	intron_variant
rs6561674	Chr13:53226473(Fwd)	upstream_gene_variant
rs4598803	Chr13:42762871(Fwd)	intron_variant; nc_transcript_variant
rs2760344	Chr13:47438549(Fwd)	intron_variant
rs1370073	Chr13:55841986(Fwd)
rs1928040	Chr13:47447236(Fwd)	intron_variant
rs2118093	Chr13:53227840(Fwd)	intron_variant; nc_transcript_variant
rs2122247	Chr13:42763140(Fwd)	intron_variant; nc_transcript_variant
rs2760345	Chr13:47438574(Fwd)	intron_variant
rs1657207	Chr13:55903477(Fwd)
rs9316235	Chr13:47445703(Fwd)	intron_variant
rs8000715	Chr13:53228119(Fwd)	intron_variant; nc_transcript_variant
rs12584544	Chr13:42768720(Fwd)	intron_variant; nc_transcript_variant
rs7326071	Chr13:47438668(Fwd)	intron_variant
rs3125765	Chr13:55696048(Fwd)
rs9526245	Chr13:47445967(Fwd)	intron_variant
rs9536222	Chr13:53229017(Fwd)	intron_variant; nc_transcript_variant
rs1012053	Chr13:42653437(Fwd)	intron_variant
rs2760347	Chr13:47439092(Fwd)	intron_variant
rs3118194	Chr13:55700018(Fwd)
rs9567743	Chr13:47440800(Fwd)	intron_variant
rs4542538	Chr13:53232489(Fwd)	intron_variant; nc_transcript_variant
rs2253650	Chr13:42656841(Fwd)	intron_variant
rs1328674	Chr13:47441707(Fwd)	intron_variant
rs4583111	Chr13:55787245(Fwd)
rs582854	Chr13:47445877(Fwd)	intron_variant
rs4885804	Chr13:53236381(Fwd)	intron_variant; nc_transcript_variant
rs12583267	Chr13:42775439(Fwd)	intron_variant; nc_transcript_variant
rs731778	Chr13:47451779(Fwd)	intron_variant
rs7982019	Chr13:55799413(Fwd)
rs731779	Chr13:47452038(Fwd)	intron_variant
rs9526966	Chr13:53238843(Fwd)	intron_variant; nc_transcript_variant
rs1184924	Chr13:42704400(Fwd)	intron_variant
rs9534505	Chr13:47460744(Fwd)	intron_variant
rs2788706	Chr13:55803652(Fwd)
rs9562687	Chr13:47452133(Fwd)	intron_variant
rs6561677	Chr13:53238983(Fwd)	intron_variant; nc_transcript_variant
rs2025296	Chr13:47463819(Fwd)	intron_variant
rs4479118	Chr13:55857503(Fwd)
rs9562688	Chr13:47452549(Fwd)	intron_variant
rs7335270	Chr13:53240121(Fwd)	downstream_gene_variant; intron_variant
rs731245	Chr13:47472266(Fwd)	upstream_gene_variant
rs7995821	Chr13:55774579(Fwd)
rs9567746	Chr13:47456548(Fwd)	intron_variant
rs9526970	Chr13:53240546(Fwd)	downstream_gene_variant; intron_variant
rs732821	Chr13:47472879(Fwd)	upstream_gene_variant
rs9537015	Chr13:55795109(Fwd)
rs9536228	Chr13:53246054(Fwd)	intron_variant
rs9536232	Chr13:53247700(Fwd)	intron_variant
rs7999466	Chr13:53249219(Fwd)	intron_variant
rs7996692	Chr13:53251733(Fwd)	intron_variant
rs7995188	Chr13:53251766(Fwd)	intron_variant
rs4884223	Chr13:53252306(Fwd)	intron_variant
rs971513	Chr13:53253286(Fwd)	intron_variant
rs7987405	Chr13:53253938(Fwd)	intron_variant
rs9536235	Chr13:53254497(Fwd)	intron_variant
rs9316583	Chr13:53254639(Fwd)	intron_variant
rs7330361	Chr13:53256798(Fwd)	intron_variant
rs7330193	Chr13:53256830(Fwd)	intron_variant
rs4885910	Chr13:53257498(Fwd)	intron_variant
rs9536238	Chr13:53257693(Fwd)	intron_variant
rs9601513	Chr13:36441438(Fwd)	intron_variant
rs9526978	Chr13:53258173(Fwd)	intron_variant
rs17786285	Chr13:36438384(Fwd)	intron_variant
rs1036452	Chr13:53263266(Fwd)	downstream_gene_variant
rs12428086	Chr13:36441099(Fwd)	intron_variant
rs2033685	Chr13:53266210(Fwd)	downstream_gene_variant
rs7986427	Chr13:36443324(Fwd)	intron_variant
rs2033684	Chr13:53266285(Fwd)	downstream_gene_variant
rs11838747	Chr13:36443674(Fwd)	intron_variant
rs1436725	Chr13:53267206(Fwd)	downstream_gene_variant
rs17786544	Chr13:36444147(Fwd)	intron_variant
rs6561684	Chr13:53270762(Fwd)
rs17786591	Chr13:36444633(Fwd)	intron_variant
rs9536241	Chr13:53271931(Fwd)
rs12427442	Chr13:36437182(Fwd)	intron_variant
rs4586310	Chr13:53273405(Fwd)	downstream_gene_variant
rs12427459	Chr13:36437371(Fwd)	intron_variant
rs4278636	Chr13:53273480(Fwd)	downstream_gene_variant
rs17181655	Chr13:36438130(Fwd)	intron_variant
rs4261418	Chr13:53273570(Fwd)	downstream_gene_variant
rs4997646	Chr13:36438985(Fwd)	intron_variant
rs4261419	Chr13:53273591(Fwd)	downstream_gene_variant
rs943220	Chr13:36439252(Fwd)	intron_variant
rs893070	Chr13:53274627(Fwd)	downstream_gene_variant
rs10507434	Chr13:36440404(Fwd)	intron_variant
rs9568752	Chr13:53275284(Fwd)	downstream_gene_variant
rs4943345	Chr13:36447910(Fwd)	intron_variant
rs9536244	Chr13:53277646(Fwd)	3_prime_UTR_variant
rs11147591	Chr13:36450397(Fwd)	intron_variant
rs9536245	Chr13:53278894(Fwd)	intron_variant
rs4943346	Chr13:36450937(Fwd)	intron_variant
rs9536246	Chr13:53279418(Fwd)	intron_variant
rs4943348	Chr13:36451010(Fwd)	intron_variant
rs9536248	Chr13:53279570(Fwd)	intron_variant
rs3931491	Chr13:53279733(Fwd)	intron_variant
rs9526986	Chr13:53280108(Fwd)	intron_variant
rs9536249	Chr13:53281413(Fwd)	intron_variant
rs3989920	Chr13:53281522(Fwd)	intron_variant
rs6561685	Chr13:53283385(Fwd)	downstream_gene_variant; intron_variant
rs9536250	Chr13:53285093(Fwd)	downstream_gene_variant; intron_variant
rs9536257	Chr13:53297911(Fwd)	intron_variant
rs9536259	Chr13:53299621(Fwd)	intron_variant
rs9536260	Chr13:53299734(Fwd)	intron_variant
rs7319565	Chr13:19675861(Fwd)
rs9526993	Chr13:53303082(Fwd)	intron_variant
rs9581223	Chr13:19676181(Fwd)
rs9526997	Chr13:53305596(Fwd)	intron_variant
rs8000394	Chr13:19683883(Fwd)
rs4885948	Chr13:53309433(Fwd)	intron_variant
rs7990668	Chr13:19685813(Fwd)
rs12146944	Chr13:53326437(Fwd)
rs12869644	Chr13:19687814(Fwd)
rs2760857	Chr13:53122024(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant
rs9581221	Chr13:19674313(Fwd)
rs9531216	Chr13:36495741(Fwd)	intron_variant
rs7331049	Chr13:19674788(Fwd)
rs9568747	Chr13:53234583(Fwd)	intron_variant; nc_transcript_variant
rs1418985	Chr13:36495803(Fwd)	intron_variant
rs7318598	Chr13:19675324(Fwd)
rs6561676	Chr13:53238834(Fwd)	intron_variant; nc_transcript_variant
rs1171057	Chr13:36497808(Fwd)	intron_variant
rs7328859	Chr13:19675536(Fwd)
rs7325840	Chr13:53251087(Fwd)	intron_variant
rs1343190	Chr13:36524208(Fwd)	intron_variant
rs7328641	Chr13:19676012(Fwd)
rs9526976	Chr13:53255948(Fwd)	intron_variant
rs9575003	Chr13:36534075(Fwd)	intron_variant
rs9581228	Chr13:19677307(Fwd)
rs9526991	Chr13:53299622(Fwd)	intron_variant
rs9565707	Chr13:36534491(Fwd)	intron_variant
rs9581229	Chr13:19677421(Fwd)
rs7335091	Chr13:53231454(Fwd)	intron_variant; nc_transcript_variant
rs9565709	Chr13:36534745(Fwd)	intron_variant
rs7983354	Chr13:19677758(Fwd)
rs2408657	Chr13:53262175(Fwd)	3_prime_UTR_variant; downstream_gene_variant
rs9565713	Chr13:36535217(Fwd)	intron_variant
rs7983507	Chr13:19677808(Fwd)
rs1898282	Chr13:53265418(Fwd)	downstream_gene_variant
rs9565715	Chr13:36535494(Fwd)	intron_variant
rs8000614	Chr13:19683972(Fwd)
rs7338913	Chr13:53283062(Fwd)	downstream_gene_variant; intron_variant
rs9575010	Chr13:36537653(Fwd)	intron_variant
rs7987092	Chr13:19684053(Fwd)
rs4884249	Chr13:53296671(Fwd)	intron_variant
rs9601789	Chr13:36539910(Fwd)	intron_variant
rs9581256	Chr13:19684391(Fwd)
rs619222	Chr13:53197222(Fwd)	intron_variant; nc_transcript_variant
rs1170984	Chr13:36542240(Fwd)	intron_variant
rs17071834	Chr13:19687702(Fwd)
rs694014	Chr13:53203709(Fwd)	intron_variant; nc_transcript_variant
rs9575015	Chr13:36542754(Fwd)	intron_variant
rs7991406	Chr13:19688889(Fwd)
rs7329993	Chr13:53226628(Fwd)	upstream_gene_variant
rs1170985	Chr13:36542954(Fwd)	intron_variant
rs6491024	Chr13:19689042(Fwd)
rs4551925	Chr13:53273634(Fwd)	downstream_gene_variant
rs1022945	Chr13:36545120(Fwd)	intron_variant
rs17069102	Chr13:19673450(Fwd)
rs893069	Chr13:53274683(Fwd)	downstream_gene_variant
rs9565720	Chr13:36546563(Fwd)	intron_variant
rs17071862	Chr13:19690076(Fwd)
rs7992760	Chr13:53278104(Fwd)	intron_variant
rs2066448	Chr13:36547142(Fwd)	intron_variant
rs4770762	Chr13:19670142(Fwd)
rs4242994	Chr13:53280938(Fwd)	intron_variant
rs1361824	Chr13:36559951(Fwd)	intron_variant
rs17090507	Chr13:19673402(Fwd)
rs6420307	Chr13:53289394(Fwd)	intron_variant
rs9590666	Chr13:42712871(Fwd)	intron_variant; upstream_gene_variant
rs1171052	Chr13:36499098(Fwd)	intron_variant
rs4338683	Chr13:53297753(Fwd)	intron_variant
rs716934	Chr13:42719995(Fwd)	intron_variant; nc_transcript_variant
rs9590671	Chr13:42726974(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs1171072	Chr13:36502031(Fwd)	intron_variant
rs9532997	Chr13:42673177(Fwd)	intron_variant
rs1171075	Chr13:36506542(Fwd)	intron_variant
rs9532998	Chr13:42673336(Fwd)	intron_variant
rs1171093	Chr13:36509456(Fwd)	intron_variant
rs9525569	Chr13:42674830(Fwd)	intron_variant
rs1171092	Chr13:36509728(Fwd)	intron_variant
rs9525570	Chr13:42675006(Fwd)	intron_variant
rs1171090	Chr13:36510728(Fwd)	intron_variant
rs9525573	Chr13:42677500(Fwd)	intron_variant
rs9574969	Chr13:36525307(Fwd)	intron_variant
rs9590664	Chr13:42695704(Fwd)	intron_variant
rs9574926	Chr13:36498356(Fwd)	intron_variant
rs10492444	Chr13:42734389(Fwd)	intron_variant; nc_transcript_variant
rs9574928	Chr13:36498999(Fwd)	intron_variant
rs9315897	Chr13:42738982(Fwd)	intron_variant; nc_transcript_variant
rs7989245	Chr13:36499597(Fwd)	intron_variant
rs17722449	Chr13:90713395(Fwd)	intron_variant; nc_transcript_variant
rs9532993	Chr13:42664617(Fwd)	intron_variant
rs9574930	Chr13:36499846(Fwd)	intron_variant
rs8001119	Chr13:90731903(Fwd)	intron_variant; nc_transcript_variant
rs1115398	Chr13:42669119(Fwd)	intron_variant
rs7332579	Chr13:36500741(Fwd)	intron_variant
rs7327983	Chr13:90742412(Fwd)	intron_variant; nc_transcript_variant
rs9315887	Chr13:42671625(Fwd)	intron_variant
rs17722485	Chr13:90713614(Fwd)	intron_variant; nc_transcript_variant
rs9645982	Chr13:42681425(Fwd)	intron_variant
rs12856887	Chr13:42686601(Fwd)	intron_variant
rs9645983	Chr13:42687303(Fwd)	intron_variant
rs9594677	Chr13:42694222(Fwd)	intron_variant
rs627089	Chr13:42698918(Fwd)	intron_variant
rs7986454	Chr13:42703394(Fwd)	intron_variant
rs2038882	Chr13:42705435(Fwd)	intron_variant
rs9533005	Chr13:42706147(Fwd)	intron_variant
rs17520002	Chr13:42739775(Fwd)	intron_variant; nc_transcript_variant
rs9525576	Chr13:42685989(Fwd)	intron_variant
rs10467371	Chr13:42740328(Fwd)	intron_variant; nc_transcript_variant
rs9533002	Chr13:42689009(Fwd)	intron_variant
rs13378817	Chr13:42740933(Fwd)	intron_variant; nc_transcript_variant
rs9562380	Chr13:42704847(Fwd)	intron_variant
rs9594693	Chr13:42744103(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs7983995	Chr13:42708231(Fwd)	intron_variant; upstream_gene_variant
rs977003	Chr13:47415001(Fwd)	intron_variant
rs3742261	Chr13:42703682(Fwd)	intron_variant; splice_region_variant
rs7327259	Chr13:42709345(Fwd)	intron_variant; upstream_gene_variant
rs7333412	Chr13:47403360(Fwd)	downstream_gene_variant
rs2038883	Chr13:42705815(Fwd)	intron_variant
rs7329683	Chr13:42721707(Fwd)	intron_variant; nc_transcript_variant
rs7324017	Chr13:47406845(Fwd)	downstream_gene_variant
rs965256	Chr13:42719209(Fwd)	intron_variant; nc_transcript_variant
rs9566931	Chr13:42724498(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs3803189	Chr13:47408570(Fwd)	3_prime_UTR_variant
rs1886811	Chr13:42722064(Fwd)	intron_variant; nc_transcript_variant
rs9533015	Chr13:42726118(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs3125	Chr13:47408851(Fwd)	3_prime_UTR_variant
rs4624054	Chr13:42723462(Fwd)	intron_variant; nc_transcript_variant
rs9533019	Chr13:42730949(Fwd)	intron_variant; nc_transcript_variant
rs1923882	Chr13:47411661(Fwd)	intron_variant
rs619659	Chr13:42706673(Fwd)	intron_variant
rs10459372	Chr13:42732565(Fwd)	intron_variant; nc_transcript_variant
rs7994985	Chr13:36675449(Fwd)	intron_variant
rs790532	Chr13:50723662(Fwd)	intron_variant; nc_transcript_variant
rs9533007	Chr13:42710235(Fwd)	intron_variant; upstream_gene_variant
rs9533020	Chr13:42733029(Fwd)	intron_variant; nc_transcript_variant
rs7329944	Chr13:36679372(Fwd)	intron_variant
rs2490637	Chr13:50545357(Fwd)
rs2296972	Chr13:47428471(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs9315894	Chr13:42733977(Fwd)	intron_variant; nc_transcript_variant
rs9531436	Chr13:36674859(Fwd)	intron_variant
rs2066550	Chr13:50590871(Fwd)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs9574516	Chr13:36335335(Fwd)
rs1555819	Chr13:42741873(Fwd)	intron_variant; nc_transcript_variant
rs2472395	Chr13:50602929(Fwd)	intron_variant; nc_transcript_variant
rs11843701	Chr13:36341438(Fwd)	downstream_gene_variant
rs2476391	Chr13:50618504(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant
rs3803279	Chr13:36345019(Fwd)	downstream_gene_variant
rs790937	Chr13:50651956(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs7985724	Chr13:36316249(Fwd)
rs790939	Chr13:50660881(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs7317552	Chr13:36318804(Fwd)
rs706617	Chr13:50703185(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs9545221	Chr13:36323749(Fwd)
rs706615	Chr13:50706551(Fwd)	intron_variant; nc_transcript_variant
rs6563142	Chr13:36326783(Fwd)
rs790530	Chr13:50725537(Fwd)	intron_variant; nc_transcript_variant
rs6563147	Chr13:36329029(Fwd)
rs790528	Chr13:50726454(Fwd)	intron_variant; nc_transcript_variant
rs7992892	Chr13:36330674(Fwd)
rs2490639	Chr13:50532130(Fwd)
rs7997939	Chr13:36330761(Fwd)
rs790941	Chr13:50629407(Fwd)	intron_variant; nc_transcript_variant
rs9574508	Chr13:36334125(Fwd)
rs790934	Chr13:50697194(Fwd)	intron_variant; nc_transcript_variant
rs9574510	Chr13:36334809(Fwd)
rs2812223	Chr13:50730862(Fwd)	intron_variant; nc_transcript_variant
rs9574511	Chr13:36334881(Fwd)
rs2687934	Chr13:50732262(Fwd)	intron_variant; nc_transcript_variant
rs9574512	Chr13:36334954(Fwd)
rs2687935	Chr13:50732286(Fwd)	intron_variant; nc_transcript_variant
rs9574513	Chr13:36335136(Fwd)
rs2687936	Chr13:50732513(Fwd)	intron_variant; nc_transcript_variant
rs9574515	Chr13:36335203(Fwd)
rs2812224	Chr13:50731245(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant
rs9565538	Chr13:36338045(Fwd)
rs2760912	Chr13:50732675(Fwd)	intron_variant; nc_transcript_variant
rs9574527	Chr13:36338151(Fwd)
rs2760913	Chr13:50733989(Fwd)	intron_variant; nc_transcript_variant
rs9574528	Chr13:36338195(Fwd)
rs1798975	Chr13:50734294(Fwd)	intron_variant; nc_transcript_variant
rs9574529	Chr13:36338432(Fwd)
rs9574530	Chr13:36338459(Fwd)
rs9565540	Chr13:36338503(Fwd)
rs872060	Chr13:36338917(Fwd)
rs1886549	Chr13:36339275(Fwd)
rs9574568	Chr13:36351355(Fwd)	intron_variant
rs9545328	Chr13:36352139(Fwd)	intron_variant
rs4941816	Chr13:36333519(Fwd)
rs9285148	Chr13:42704669(Fwd)	intron_variant
rs4941570	Chr13:47439371(Fwd)	intron_variant
rs9545294	Chr13:36340767(Fwd)	downstream_gene_variant
rs9567737	Chr13:47421266(Fwd)	intron_variant
rs1667559	Chr13:42798106(Fwd)	intron_variant; nc_transcript_variant
rs9526246	Chr13:47449861(Fwd)	intron_variant
rs7992754	Chr13:36352224(Fwd)	intron_variant
rs4941573	Chr13:47464857(Fwd)	intron_variant
rs9545332	Chr13:36355680(Fwd)	intron_variant
rs9534513	Chr13:47474138(Fwd)	upstream_gene_variant
rs7326597	Chr13:36333956(Fwd)
rs4941575	Chr13:47475294(Fwd)	upstream_gene_variant
rs9645963	Chr13:36349503(Fwd)	intron_variant
rs9534515	Chr13:47476958(Fwd)
rs17052887	Chr13:36380989(Fwd)	intron_variant; nc_transcript_variant
rs2149434	Chr13:47478344(Fwd)
rs1360020	Chr13:47482660(Fwd)
rs9534516	Chr13:47484149(Fwd)
rs1928044	Chr13:47505090(Fwd)
rs1928045	Chr13:47505170(Fwd)
rs1079254	Chr13:47506907(Fwd)
rs16947065	Chr13:92802622(Fwd)	intron_variant
rs9534532	Chr13:47521248(Fwd)
rs7984409	Chr13:92808671(Fwd)	intron_variant
rs9316240	Chr13:47522992(Fwd)
rs17267116	Chr13:92787557(Fwd)	intron_variant
rs9526255	Chr13:47523375(Fwd)
rs7991173	Chr13:92788369(Fwd)	intron_variant
rs1410654	Chr13:47523624(Fwd)
rs2182500	Chr13:92789414(Fwd)	intron_variant
rs9534511	Chr13:47468580(Fwd)	intron_variant
rs17188397	Chr13:92793583(Fwd)	intron_variant
rs2026690	Chr13:47483177(Fwd)
rs4773670	Chr13:92810852(Fwd)	intron_variant
rs1410659	Chr13:47489076(Fwd)
rs4773672	Chr13:92823253(Fwd)	intron_variant
rs7323441	Chr13:47406628(Fwd)	downstream_gene_variant
rs7326950	Chr13:92827622(Fwd)	intron_variant
rs7325168	Chr13:47406731(Fwd)	downstream_gene_variant
rs7988209	Chr13:36672942(Fwd)	intron_variant
rs7324218	Chr13:47406956(Fwd)	downstream_gene_variant
rs1305870	Chr13:36597840(Fwd)	intron_variant
rs9595552	Chr13:47407430(Fwd)	downstream_gene_variant
rs41464045	Chr13:36631355(Fwd)	intron_variant
rs17053405	Chr13:36642259(Fwd)	intron_variant
rs9565848	Chr13:36676259(Fwd)	intron_variant
rs8000568	Chr13:36681361(Fwd)	intron_variant
rs8002438	Chr13:100553260(Fwd)	downstream_gene_variant
rs7326722	Chr13:94404488(Fwd)	intron_variant
rs4366594	Chr13:94405336(Fwd)	intron_variant
rs4337169	Chr13:94416001(Fwd)	intron_variant
rs4389020	Chr13:94416206(Fwd)	intron_variant
rs4773761	Chr13:94407059(Fwd)	intron_variant
rs4558277	Chr13:94416027(Fwd)	intron_variant
rs4275728	Chr13:94416035(Fwd)	intron_variant
rs9510997	Chr13:24592857(Fwd)	intron_variant; nc_transcript_variant
rs4517643	Chr13:94417873(Fwd)	intron_variant
rs4770552	Chr13:24594430(Fwd)	intron_variant; nc_transcript_variant
rs4597178	Chr13:94419023(Fwd)	intron_variant
rs17079755	Chr13:24592790(Fwd)	intron_variant; nc_transcript_variant
rs9301908	Chr13:94431085(Fwd)	intron_variant
rs17079770	Chr13:24594667(Fwd)	intron_variant; nc_transcript_variant
rs7992378	Chr13:94432538(Fwd)	intron_variant
rs12430935	Chr13:24600633(Fwd)	intron_variant; nc_transcript_variant
rs3759424	Chr13:94445001(Fwd)	intron_variant
rs10507336	Chr13:24605800(Fwd)	intron_variant; nc_transcript_variant
rs7337988	Chr13:94458907(Fwd)	intron_variant
rs7330947	Chr13:24607400(Fwd)	intron_variant; nc_transcript_variant
rs2389049	Chr13:94462100(Fwd)	intron_variant
rs17079801	Chr13:24608624(Fwd)	downstream_gene_variant
rs9567732	Chr13:47401007(Fwd)
rs9567733	Chr13:47401335(Fwd)
rs9578807	Chr13:19674601(Fwd)
rs11843245	Chr13:36340137(Fwd)
rs9581286	Chr13:19691387(Fwd)
rs1045696	Chr13:36345816(Fwd)	3_prime_UTR_variant
rs9646082	Chr13:36362830(Fwd)	intron_variant; nc_transcript_variant
rs9513679	Chr13:100552850(Fwd)	downstream_gene_variant
rs7326177	Chr13:36363908(Fwd)	intron_variant; nc_transcript_variant
rs9524187	Chr13:94397699(Fwd)	intron_variant
rs6563164	Chr13:36370428(Fwd)	intron_variant; upstream_gene_variant
rs9562683	Chr13:47400745(Fwd)
rs9545395	Chr13:36370970(Fwd)	intron_variant; upstream_gene_variant
rs12855118	Chr13:36372410(Fwd)	intron_variant; upstream_gene_variant
rs4942578	Chr13:47432610(Fwd)	downstream_gene_variant; intron_variant
rs17052884	Chr13:36380806(Fwd)	intron_variant; nc_transcript_variant
rs9545421	Chr13:36381662(Fwd)	intron_variant; nc_transcript_variant
rs9545423	Chr13:36381778(Fwd)	intron_variant; nc_transcript_variant
rs9530945	Chr13:36308757(Fwd)
rs11840264	Chr13:36352245(Fwd)	intron_variant
rs1923885	Chr13:47423086(Fwd)	intron_variant; upstream_gene_variant
rs7330461	Chr13:47423565(Fwd)	intron_variant; upstream_gene_variant
rs7330636	Chr13:47423592(Fwd)	intron_variant; upstream_gene_variant
rs9567735	Chr13:47419204(Fwd)	intron_variant
rs3742278	Chr13:47419577(Fwd)	intron_variant
rs4941822	Chr13:36453613(Fwd)	intron_variant
rs9567736	Chr13:47420983(Fwd)	intron_variant
rs10781824	Chr13:55836929(Fwd)
rs4943350	Chr13:36453860(Fwd)	intron_variant
rs9562685	Chr13:47421223(Fwd)	intron_variant
rs2217929	Chr13:55842158(Fwd)
rs1936002	Chr13:36456084(Fwd)	intron_variant
rs1923884	Chr13:47421836(Fwd)	intron_variant; upstream_gene_variant
rs641385	Chr13:55873025(Fwd)
rs9545602	Chr13:36456503(Fwd)	intron_variant
rs1436728	Chr13:53228460(Fwd)	intron_variant; nc_transcript_variant
rs652683	Chr13:55880553(Fwd)
rs9545604	Chr13:36456942(Fwd)	intron_variant
rs9316581	Chr13:53245178(Fwd)	intron_variant
rs3125759	Chr13:55679154(Fwd)
rs4941823	Chr13:36453926(Fwd)	intron_variant
rs973198	Chr13:53250839(Fwd)	intron_variant
rs3118184	Chr13:55679196(Fwd)
rs4885887	Chr13:53252726(Fwd)	intron_variant
rs3118186	Chr13:55681284(Fwd)
rs4539485	Chr13:53254082(Fwd)	intron_variant
rs3118190	Chr13:55695305(Fwd)
rs7330755	Chr13:53264457(Fwd)	downstream_gene_variant
rs1570751	Chr13:55699568(Fwd)
rs9596671	Chr13:53267811(Fwd)

CNV (count: 12)

ID	Band	Size	Type	Inheritance	Related Genes
CNV_Elia[2010]_154	13q12.11	59573	Deletion (hemizygous)	Paternal
CNV_Elia[2010]_155	13q34	499396	Duplication	Maternal	ATP11A C13orf35 F10 F7 MCF2L
CNV_Elia[2010]_156	13q21.33	291974	Deletion (hemizygous)	Paternal	KLHL1
CNV_Elia[2010]_157	13q32.3	30844	Deletion (hemizygous)	Maternal	CLYBL
CNV_Elia[2010]_158	13q21.31	57854	Deletion (hemizygous)	Paternal
CNV_Elia[2010]_159	13q22.1	105526	Duplication	Maternal
CNV_Elia[2010]_160	13q12.12	87776	Duplication	Paternal	SPATA13
CNV_Elia[2010]_161	13q31.1	114145	Deletion (hemizygous)	Paternal
CNV_Elia[2010]_162	13q21.32	118427	Deletion (hemizygous)	Paternal
CNV_Elia[2010]_163	13q13.3	35649	Deletion (hemizygous)	Maternal
CNV_Williams[2010]_24	13q21.31	503322	Loss		NFYAP1
CNV_Jarick[2012]_28	13q31.1-13q31.2	768144	del		TXNL1P1

Gene (count: 77)

Literature-origin genes (count: 10)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
HTR2A	5-hydroxytryptamine (serotonin) receptor 2A	13q14-q21	12(6/6/0)
LOC100128765	similar to hCG2041516 [WITHDRAWN RefSeq, protein coding gene]	13q12.11	1(0/0/1)
CLYBL	citrate lyase beta like	13q32.3	1(0/0/1)
ATP11A	ATPase, class VI, type 11A	13q34	1(0/1/0)
DLEU2	deleted in lymphocytic leukemia 2 (non-protein coding)	13q14	1(0/0/1)
DCLK1	doublecortin-like kinase 1	13q13.3	1(1/0/0)
DGKH	diacylglycerol kinase, eta	13q13.3	1(1/0/0)
GPC5	glypican 5	13q32	1(0/0/1)
GPC6	glypican 6	13q32	1(0/0/1)
LECT1	leukocyte cell derived chemotaxin 1	13q14.3	1(0/1/0)

Genes from other sources (count: 67)

Approved Symbol	Approved Name	Location
F10	coagulation factor X	13q34
F7	coagulation factor VII (serum prothrombin conversion accelerator)	13q34
PSPC1	paraspeckle component 1	13q11
IFT88	intraflagellar transport 88 homolog (Chlamydomonas)	13q12.1
IL17D	interleukin 17D	13q11
DLEU1	deleted in lymphocytic leukemia 1 (non-protein coding)	13q14.3
FGF9	fibroblast growth factor 9 (glia-activating factor)	13q11-q12
MPHOSPH8	M-phase phosphoprotein 8	13q12.11
RPS7P10	ribosomal protein S7 pseudogene 10	13q12.11
DLEU7	deleted in lymphocytic leukemia, 7	13q14.3
LINC00559	long intergenic non-protein coding RNA 559	13
MRP63	mitochondrial ribosomal protein 63	13q12.11
RPSAP54	ribosomal protein SA pseudogene 54	13q12.11
FNTAP2	farnesyltransferase, CAAX box, alpha pseudogene 2	13q12.11
MRPL3P1	mitochondrial ribosomal protein L3 pseudogene 1	13q12.11
MRPS31P2	mitochondrial ribosomal protein S31 pseudogene 2	13q12.11
CRYL1	crystallin, lambda 1	13q11
SAP18	Sin3A-associated protein, 18kDa	13q12.11
HNRNPA1L2	heterogeneous nuclear ribonucleoprotein A1-like 2	13q14.3
FTH1P7	ferritin, heavy polypeptide 1 pseudogene 7	13q12.11
XPO4	exportin 4	13q11
TXNL1P1	thioredoxin-like 1 pseudogene 1	13q31.1
KRR1P1	KRR1, small subunit (SSU) processome component, homolog (yeast) pseudogene 1	13q12.11
KCNRG	potassium channel regulator	13q14.11
N6AMT2	N-6 adenine-specific DNA methyltransferase 2 (putative)	13q12.11
TRPC4	transient receptor potential cation channel, subfamily C, member 4	13q13.3
CYCSP32	cytochrome c, somatic pseudogene 32	13q12.11
ZDHHC20	zinc finger, DHHC-type containing 20	13q12.11
GAPDHP52	glyceraldehyde 3 phosphate dehydrogenase pseudogene 52	13q12.11
C13orf35	chromosome 13 open reading frame 35	13q34
PHF2P1	PHD finger protein 2 pseudogene 1	13q11
ZMYM2	zinc finger, MYM-type 2	13q11-q12
ZMYM5	zinc finger, MYM-type 5	13q12
KLHL1	kelch-like 1 (Drosophila)	13q21
MIR15A	microRNA 15a	13q14.2
MIR16-1	microRNA 16-1	13q14.2
SKA3	spindle and kinetochore associated complex subunit 3	13q11
GJA3	gap junction protein, alpha 3, 46kDa	13q12.11
GJB2	gap junction protein, beta 2, 26kDa	13q11-q12
DDX39AP1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A pseudogene 1	13q12.11
GJB6	gap junction protein, beta 6, 30kDa	13q12
LATS2	LATS, large tumor suppressor, homolog 2 (Drosophila)	13q11-q12
MRPS31P4	mitochondrial ribosomal protein S31 pseudogene 4	13
MCF2L	MCF.2 cell line derived transforming sequence-like	13q34
PARP4P2	poly (ADP-ribose) polymerase family, member 4 pseudogene 2	13q12.11
TPTE2	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2	13q12.11
SMPD4P2	sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene 2	13q12.11
GRK6P1	G protein-coupled receptor kinase 6 pseudogene 1	13q12.11
EFHA1	EF-hand domain family, member A1	13q12.11
CENPJ	centromere protein J	13q12.12
COG3	component of oligomeric golgi complex 3	13q14.11
ANKRD26P3	ankyrin repeat domain 26 pseudogene 3	13q12.11
NFYAP1	nuclear transcription factor Y, alpha pseudogene 1	13q21.31
ESRRAP1	estrogen-related receptor alpha pseudogene 1	13q12.1
ESRRAP2	estrogen-related receptor alpha pseudogene 2	13q12.11
HNRNPA1P30	heterogeneous nuclear ribonucleoprotein A1 pseudogene 30	13q12.11
SUGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	13q12.2-q13.3
SPATA13	spermatogenesis associated 13	13q12.13
TUBA3C	tubulin, alpha 3c	13q12.11
THSD1P1	thrombospondin, type I, domain containing 1 pseudogene 1	13q14.2
RPS12P23	ribosomal protein S12 pseudogene 23	13q12.11
TPTE2P2	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 2	13q14.3
TPTE2P3	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3	13q14.3
TRIM13	tripartite motif containing 13	13q14
MED4	mediator complex subunit 4	13q14.12
CENPIP1	centromere protein I pseudogene 1	13q12.11
TRNAQ50P	transfer RNA glutamine 50 (anticodon UUG) pseudogene	13q13.3

Region (count: 5)

Region Name	Location	No. of Studies (postive/negative/trend)
13q33	chr13:101700000-110300000	2 (0/2/0)
13q12	chr13:19500000-32200000	1 (0/1/0)
13q12.11	chr13:19500000-23300000	1 (1/0/0)
13q31	chr13:79000000-95000000	1 (0/1/0)
13q33.3	chr13:107000000-110300000	1 (0/1/0)

View in gBrowse

Region: chr13:0..115169878 View in gBrowse
(The coordinate of the CNV has been transformed to NCBI Build 37 (hg19) in gBrowse)