ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs6561686 dbSNP Ensembl
Location	Chr13:53289094(Fwd)
Variant Alleles	C/T
Ancestral Allele	T
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000448904; ENST00000431550; ENST00000377962)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Mick E, 2010		C	TDT P-value=2.08E-05 (OR=0.47) TDT P-value=2.08E-05 (OR=0.47)	One of the top 20 associations from genome-wide association ...... One of the top 20 associations from genome-wide association results More...	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
LECT1	leukocyte cell derived chemotaxin 1	13q14.3	1(0/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs6561686 (count: 118) View in gBrowse (chr13:52793806..53326437 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 118)

rs_ID	Functional Annotation	r²[population]
rs9536244	3_prime_UTR_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs617660	5_prime_UTR_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[CEU]; 1.0[JPT]
rs9536257	intron_variant	1.0[CEU]; 1.0[JPT]
rs893070	downstream_gene_variant	1.0[CEU]; 1.0[JPT]
rs9526957	5_prime_UTR_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHD]; 1.0[JPT]; 1.0[MEX]; 0.823[TSI]
rs9526958	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]
rs9536250	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs619222	intron_variant; nc_transcript_variant	1.0[YRI]
rs2408657	3_prime_UTR_variant; downstream_gene_variant	0.87[LWK]; 1.0[YRI]
rs7994651	downstream_gene_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.913[MKK]; 0.911[TSI]; 1.0[YRI]
rs1925135	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]; 1.0[JPT]
rs9536153	intron_variant; nc_transcript_variant	1.0[CEU]
rs7330361	intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs9536195		1.0[CEU]; 1.0[CHD]; 0.85[GIH]; 1.0[JPT]; 1.0[MEX]
rs4884249	intron_variant	0.87[LWK]
rs2118093	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.913[MKK]; 0.828[TSI]; 1.0[YRI]
rs9536184		1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[MEX]; 0.911[TSI]
rs6561684		1.0[CEU]; 1.0[JPT]
rs662582	intron_variant; nc_transcript_variant	1.0[CEU]
rs693991	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[MEX]; 0.911[TSI]
rs342777	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[MEX]; 0.911[TSI]
rs3989920	intron_variant	1.0[CEU]; 1.0[YRI]
rs342774	downstream_gene_variant	1.0[CEU]; 1.0[CHD]; 0.911[GIH]; 1.0[JPT]; 1.0[MEX]; 0.911[TSI]
rs6420307	intron_variant	1.0[YRI]
rs9526986	intron_variant	1.0[CEU]; 1.0[JPT]
rs7329993	upstream_gene_variant	1.0[YRI]
rs7992760	intron_variant	1.0[YRI]
rs7999466	intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs9536228	intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs9536136	intron_variant; nc_transcript_variant	1.0[CEU]
rs4261418	downstream_gene_variant	1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 0.911[TSI]
rs4542538	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs9316581	intron_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.913[MKK]; 0.911[TSI]; 1.0[YRI]
rs342769	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]
rs7335091	intron_variant; nc_transcript_variant	0.87[LWK]; 1.0[YRI]
rs7319451	downstream_gene_variant; upstream_gene_variant	0.825[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[MEX]; 0.911[TSI]
rs7996692	intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs9568752	downstream_gene_variant	1.0[CEU]; 1.0[JPT]
rs9536216	downstream_gene_variant	1.0[CEU]; 1.0[JPT]
rs9526997	intron_variant	1.0[CEU]; 1.0[JPT]
rs4539485	intron_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.84[MKK]; 0.911[TSI]; 1.0[YRI]
rs11148262	downstream_gene_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs8000715	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[MEX]; 0.911[TSI]
rs1805200	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[MEX]; 0.911[TSI]
rs646498	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]
rs971513	intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs1436724	intron_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.913[MKK]; 0.911[TSI]; 1.0[YRI]
rs1036452	downstream_gene_variant	1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[MEX]; 0.911[TSI]
rs682343	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[MEX]; 0.911[TSI]
rs4551925	downstream_gene_variant	1.0[YRI]
rs9536260	intron_variant	1.0[CEU]; 1.0[CHD]; 1.0[JPT]; 1.0[MEX]; 0.823[TSI]
rs3931491	intron_variant	1.0[CEU]; 1.0[JPT]
rs2575965	nc_transcript_variant; non_coding_exon_variant	1.0[CEU]; 1.0[JPT]; 1.0[MEX]; 0.828[TSI]
rs9536232	intron_variant	1.0[CEU]; 1.0[JPT]
rs9536248	intron_variant	1.0[CEU]; 1.0[JPT]
rs4261419	downstream_gene_variant	1.0[CEU]; 1.0[JPT]
rs694014	intron_variant; nc_transcript_variant	1.0[YRI]
rs1370082		1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.913[MKK]; 1.0[TSI]; 1.0[YRI]
rs12146944		1.0[CHD]; 1.0[JPT]
rs9596671		1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.913[MKK]; 0.911[TSI]; 1.0[YRI]
rs9536245	intron_variant	1.0[CEU]; 1.0[JPT]
rs7330755	downstream_gene_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.913[MKK]; 0.911[TSI]; 1.0[YRI]
rs9526966	intron_variant; nc_transcript_variant	0.825[CEU]; 1.0[JPT]
rs6561676	intron_variant; nc_transcript_variant	1.0[JPT]; 1.0[YRI]
rs4885910	intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs237106	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]
rs7992165		1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.913[MKK]; 0.911[TSI]; 1.0[YRI]
rs2033684	downstream_gene_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs9526932	intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[CEU]; 1.0[JPT]; 0.911[TSI]
rs9526991	intron_variant	1.0[JPT]
rs6561677	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs9568747	intron_variant; nc_transcript_variant	1.0[JPT]
rs7335270	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs6561674	upstream_gene_variant	1.0[CEU]
rs4278636	downstream_gene_variant	1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[MEX]; 0.911[TSI]
rs7338913	downstream_gene_variant; intron_variant	0.87[LWK]; 1.0[YRI]
rs9536259	intron_variant	1.0[CEU]; 1.0[JPT]
rs9536249	intron_variant	1.0[CEU]; 1.0[JPT]
rs4885948	intron_variant	1.0[CHD]; 1.0[JPT]
rs615509	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]
rs9536241		1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs9536246	intron_variant	1.0[CEU]
rs6561673	upstream_gene_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs7987405	intron_variant	1.0[CEU]; 1.0[JPT]
rs9526978	intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs7995188	intron_variant	1.0[CEU]; 1.0[JPT]
rs603070	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]
rs4338683	intron_variant	1.0[YRI]
rs4885804	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]
rs6561685	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs973198	intron_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.913[MKK]; 0.911[TSI]; 1.0[YRI]
rs9526942	intron_variant; nc_transcript_variant	1.0[JPT]
rs186900	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]
rs4885887	intron_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 1.0[LWK]; 0.913[MKK]; 0.911[TSI]; 1.0[YRI]
rs9526976	intron_variant	1.0[JPT]
rs9536222	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]; 0.913[MKK]; 0.808[TSI]; 1.0[YRI]
rs9316583	intron_variant	1.0[CEU]; 1.0[JPT]
rs9536238	intron_variant	1.0[CEU]; 1.0[JPT]
rs7330193	intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs9526970	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs7325840	intron_variant	1.0[JPT]
rs4884223	intron_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs2760780	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]
rs676306	5_prime_UTR_variant; nc_transcript_variant; non_coding_exon_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs9536189		1.0[CEU]; 1.0[JPT]
rs4586310	downstream_gene_variant	1.0[CEU]; 1.0[JPT]
rs1436728	intron_variant; nc_transcript_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 0.884[LWK]; 1.0[MEX]; 0.913[MKK]; 0.904[TSI]; 1.0[YRI]
rs893069	downstream_gene_variant	1.0[YRI]
rs1898282	downstream_gene_variant	0.87[LWK]
rs630892	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs2033685	downstream_gene_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs2760857	intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[JPT]
rs9526993	intron_variant	1.0[CEU]; 1.0[JPT]
rs9536235	intron_variant	1.0[CEU]; 1.0[YRI]
rs342772	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[JPT]
rs1436725	downstream_gene_variant	1.0[CEU]; 1.0[JPT]; 1.0[YRI]
rs4242994	intron_variant	1.0[YRI]
rs2760801	intron_variant; nc_transcript_variant; upstream_gene_variant	0.825[CEU]