ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs9545297 dbSNP Ensembl
Location	Chr13:36341668(Fwd)
Variant Alleles	T/G
Ancestral Allele	G
Functional Annotation	downstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000255448; ENST00000360631; ENST00000379893)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Havik, B., 2012			P-value=0.379, OR (95% CI)=0.88 (0.67-1.14) in the Norwegian...... P-value=0.379, OR (95% CI)=0.88 (0.67-1.14) in the Norwegian sample; P-value=0.185, OR (95% CI)=1.20 (0.98-1.47) in the German sample; P-value=0.521, OR (95% CI)=1.04 (0.89¨C1.22) in the merged sample More...	The marker did not show significant association with ADHD. The marker did not show significant association with ADHD.	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DCLK1	doublecortin-like kinase 1	13q13.3	1(1/0/0)

Genes from other sources (count: 0)

SNPs in LD with rs9545297 (count: 40) View in gBrowse (chr13:36316249..36383264 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 1)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs9545424	intron_variant; upstream_gene_variant	1(0/1/0)	0.874[CEU]

LD-proxies (count: 39)

rs_ID	Functional Annotation	r²[population]
rs9574508		1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs9545221		0.939[CEU]; 1.0[CHB]; 0.951[JPT]
rs9574516		1.0[ASW]; 0.939[CEU]; 1.0[CHB]; 1.0[CHD]; 0.931[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.964[MKK]; 1.0[TSI]; 1.0[YRI]
rs17052884	intron_variant; nc_transcript_variant	0.873[CEU]
rs9574512		0.939[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs9574513		0.936[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs6563147		0.939[CEU]; 1.0[CHB]; 0.977[CHD]; 0.863[GIH]; 0.953[JPT]; 0.907[TSI]
rs7997939		0.939[CEU]; 1.0[CHB]; 0.976[CHD]; 0.864[GIH]; 0.953[JPT]; 0.907[TSI]
rs9545332	intron_variant	0.816[CHB]; 0.91[CHD]; 0.839[GIH]; 0.953[JPT]; 0.802[TSI]
rs3803279	downstream_gene_variant	0.931[ASW]; 1.0[CEU]; 0.816[CHB]; 0.91[CHD]; 0.931[GIH]; 1.0[JPT]; 0.932[LWK]; 1.0[MEX]; 1.0[TSI]; 1.0[YRI]
rs9574510		0.939[CEU]; 1.0[CHB]; 0.952[JPT]; 1.0[YRI]
rs7985724		0.823[CEU]; 0.896[JPT]
rs12855118	intron_variant; upstream_gene_variant	0.874[CEU]
rs1045696	3_prime_UTR_variant	0.874[CEU]
rs4941816		1.0[CHB]; 0.977[CHD]; 0.803[GIH]; 0.953[JPT]
rs9574511		0.938[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs9545294	downstream_gene_variant	1.0[CHB]; 0.977[CHD]; 0.934[GIH]; 0.953[JPT]; 0.802[TSI]
rs9565538		0.939[CEU]; 1.0[CHB]; 1.0[JPT]; 0.956[YRI]
rs9574568	intron_variant	1.0[CEU]; 0.816[CHB]; 1.0[JPT]; 1.0[YRI]
rs1886549		0.939[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11843701	downstream_gene_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 0.977[CHD]; 0.874[GIH]; 1.0[JPT]; 0.977[LWK]; 1.0[MEX]; 0.982[MKK]; 1.0[TSI]; 1.0[YRI]
rs9545421	intron_variant; nc_transcript_variant	0.928[CEU]
rs9574529		0.935[CEU]; 1.0[CHB]; 0.947[JPT]; 1.0[YRI]
rs9545328	intron_variant	1.0[CEU]; 0.816[CHB]; 1.0[JPT]; 1.0[YRI]
rs7326177	intron_variant; nc_transcript_variant	0.874[CEU]
rs872060		0.939[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs9574527		0.933[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs9574515		0.939[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs9574528		0.938[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs6563164	intron_variant; upstream_gene_variant	0.874[CEU]
rs9545423	intron_variant; nc_transcript_variant	0.86[CEU]
rs6563142		0.939[CEU]; 1.0[CHB]; 0.977[CHD]; 0.864[GIH]; 0.953[JPT]; 0.907[TSI]
rs9565540		0.936[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs7317552		0.939[CEU]; 1.0[CHB]; 0.977[CHD]; 0.864[GIH]; 0.953[JPT]; 0.907[TSI]
rs7992892		0.939[CEU]; 1.0[CHB]; 0.953[JPT]
rs7992754	intron_variant	0.816[CHB]; 0.953[JPT]
rs9545395	intron_variant; upstream_gene_variant	0.874[CEU]
rs9574530		0.938[CEU]; 1.0[CHB]; 1.0[JPT]; 0.955[YRI]
rs7326597		0.908[CHD]