ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Chromosome Search Result

Search by: Chr = chr1

SNP: 271
Gene: 247
Region: 3

SNP (count: 271)

Literature-origin SNPs (count: 31)

rs_ID	Location	Functional Annotation	No. of Studies (significant/non-significant/trend)
rs6657749	Chr1:214576513(Fwd)	intron_variant	2(0/2/0)
rs7528615	Chr1:84732963(Fwd)		2(0/2/0)
rs2281597	Chr1:34359858(Fwd)	NMD_transcript_variant; intron_variant	1(0/0/1)
rs4650135	Chr1:69684997(Fwd)		1(0/0/1)
rs1018040	Chr1:218705814(Fwd)		1(0/0/1)
rs1524174	Chr1:80159221(Fwd)		1(0/1/0)
rs907697	Chr1:202568735(Fwd)	intron_variant; upstream_gene_variant	1(1/0/0)
rs910330	Chr1:115835500(Fwd)	intron_variant; nc_transcript_variant	1(0/1/0)
rs2856811	Chr1:115838282(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs604030	Chr1:23518227(Fwd)	downstream_gene_variant; intron_variant	1(1/0/0)
rs17095690	Chr1:75106741(Fwd)	intron_variant	1(0/1/0)
rs9633344	Chr1:202566200(Fwd)	intron_variant	1(1/0/0)
rs9659997	Chr1:20002518(Fwd)	intron_variant	1(1/0/0)
rs316987	Chr1:105047523(Fwd)		1(0/1/0)
rs6327	Chr1:115829986(Fwd)	feature_truncation; intron_variant; nc_transcript_variant	1(1/0/0)
rs6330	Chr1:115829313(Fwd)	intron_variant; missense_variant; nc_transcript_variant	1(0/1/0)
rs11590090	Chr1:113313563(Fwd)		1(0/0/1)
rs6424669	Chr1:80190866(Fwd)		1(0/1/0)
rs6427957	Chr1:202562427(Fwd)	3_prime_UTR_variant; downstream_gene_variant	1(1/0/0)
rs1801131	Chr1:11854476(Fwd)	downstream_gene_variant; missense_variant	1(0/1/0)
rs11689432	Chr1:11082610(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; missense_variant; upstream_gene_variant	1(1/0/0)
rs1801133	Chr1:11856378(Fwd)	downstream_gene_variant; missense_variant	1(0/1/0)
rs650957	Chr1:191429227(Fwd)		1(0/1/0)
rs6537860	Chr1:115856344(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs6672282	Chr1:80199565(Fwd)		1(0/0/1)
rs676643	Chr1:23521340(Fwd)	upstream_gene_variant	1(1/0/0)
rs12739678	Chr1:202604818(Fwd)	downstream_gene_variant; intron_variant	1(1/0/0)
rs719452	Chr1:115837057(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs4147141	Chr1:69579252(Fwd)	intron_variant; nc_transcript_variant	1(0/0/1)
rs2254404	Chr1:115834669(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs7543390	Chr1:80218574(Fwd)		1(0/1/0)

LD-proxies (count: 240)

rs_ID	Location	Functional Annotation
rs2776815	Chr1:23510584(Fwd)
rs1738468	Chr1:23510850(Fwd)
rs641032	Chr1:23513980(Fwd)	downstream_gene_variant
rs623988	Chr1:23519477(Fwd)	3_prime_UTR_variant; intron_variant
rs674386	Chr1:23521835(Fwd)	upstream_gene_variant
rs588387	Chr1:23523689(Fwd)	upstream_gene_variant
rs2806570	Chr1:23527005(Fwd)
rs1318345	Chr1:115834522(Fwd)	intron_variant; nc_transcript_variant
rs7532266	Chr1:23551623(Fwd)
rs2747058	Chr1:115835841(Fwd)	intron_variant; nc_transcript_variant
rs7543975	Chr1:23381116(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs2239622	Chr1:115837709(Fwd)	intron_variant; nc_transcript_variant
rs2274687	Chr1:23435669(Fwd)	5_prime_UTR_variant; intron_variant; upstream_gene_variant
rs2254527	Chr1:115833581(Fwd)	intron_variant; nc_transcript_variant
rs12067252	Chr1:23441569(Fwd)	intron_variant
rs4567277	Chr1:115856804(Fwd)	intron_variant; nc_transcript_variant
rs12087937	Chr1:23451178(Fwd)	intron_variant
rs6678898	Chr1:115839733(Fwd)	intron_variant; nc_transcript_variant
rs12038873	Chr1:23463468(Fwd)	intron_variant; upstream_gene_variant
rs4573519	Chr1:115843087(Fwd)	intron_variant; nc_transcript_variant
rs10917351	Chr1:23464974(Fwd)	intron_variant; upstream_gene_variant
rs4839434	Chr1:115845385(Fwd)	intron_variant; nc_transcript_variant
rs6691404	Chr1:23468800(Fwd)	downstream_gene_variant; intron_variant
rs10776797	Chr1:115847295(Fwd)	intron_variant; nc_transcript_variant
rs12044504	Chr1:23471096(Fwd)	downstream_gene_variant; intron_variant
rs4146585	Chr1:115847736(Fwd)	intron_variant; nc_transcript_variant
rs3845521	Chr1:23472341(Fwd)	downstream_gene_variant; intron_variant
rs4382725	Chr1:115853812(Fwd)	intron_variant; nc_transcript_variant
rs2806555	Chr1:23501774(Fwd)	intron_variant
rs7555016	Chr1:115855147(Fwd)	intron_variant; nc_transcript_variant
rs1757042	Chr1:23505894(Fwd)	upstream_gene_variant
rs2806566	Chr1:23507172(Fwd)	upstream_gene_variant
rs586589	Chr1:23523291(Fwd)	upstream_gene_variant
rs2746561	Chr1:23526552(Fwd)
rs10799793	Chr1:23545787(Fwd)
rs10917363	Chr1:23548871(Fwd)
rs12027190	Chr1:23565427(Fwd)
rs11118120	Chr1:218705761(Fwd)
rs12563275	Chr1:218706772(Fwd)
rs2047163	Chr1:218708603(Fwd)
rs987074	Chr1:218715320(Fwd)	upstream_gene_variant
rs4846489	Chr1:218718037(Fwd)	upstream_gene_variant
rs4406631	Chr1:115857958(Fwd)	intron_variant; nc_transcript_variant
rs11118121	Chr1:218719755(Fwd)	upstream_gene_variant
rs11118123	Chr1:218720002(Fwd)	upstream_gene_variant
rs9662151	Chr1:69552674(Fwd)	intron_variant; nc_transcript_variant
rs950492	Chr1:69589706(Fwd)	intron_variant; nc_transcript_variant
rs4650112	Chr1:69597419(Fwd)	intron_variant; nc_transcript_variant
rs11209397	Chr1:69614582(Fwd)	intron_variant; nc_transcript_variant
rs1336161	Chr1:69627412(Fwd)	intron_variant; nc_transcript_variant
rs1414661	Chr1:69601390(Fwd)	intron_variant; nc_transcript_variant
rs12758008	Chr1:69546248(Fwd)	intron_variant; nc_transcript_variant
rs6663863	Chr1:69568817(Fwd)	intron_variant; nc_transcript_variant
rs6671705	Chr1:69569143(Fwd)	intron_variant; nc_transcript_variant
rs11209388	Chr1:69577065(Fwd)	intron_variant; nc_transcript_variant
rs6424497	Chr1:69592799(Fwd)	intron_variant; nc_transcript_variant
rs11209396	Chr1:69606541(Fwd)	intron_variant; nc_transcript_variant
rs10889800	Chr1:69619875(Fwd)	intron_variant; nc_transcript_variant
rs12033101	Chr1:69627182(Fwd)	intron_variant; nc_transcript_variant
rs2856813	Chr1:115837919(Fwd)	intron_variant; nc_transcript_variant
rs6678788	Chr1:115839671(Fwd)	intron_variant; nc_transcript_variant
rs10799006	Chr1:34362665(Fwd)	NMD_transcript_variant; intron_variant
rs1033727	Chr1:34351001(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant
rs1884984	Chr1:34360230(Fwd)	NMD_transcript_variant; intron_variant
rs10753294	Chr1:34360862(Fwd)	NMD_transcript_variant; intron_variant
rs10799005	Chr1:34361831(Fwd)	NMD_transcript_variant; intron_variant
rs10914808	Chr1:34363480(Fwd)	NMD_transcript_variant; intron_variant
rs6425857	Chr1:34370091(Fwd)	NMD_transcript_variant; intron_variant
rs4653358	Chr1:34349815(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs6670750	Chr1:80147568(Fwd)
rs753893	Chr1:34322237(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs1479739	Chr1:80150038(Fwd)
rs10379	Chr1:34330067(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant
rs10874059	Chr1:80150246(Fwd)
rs1321627	Chr1:34331390(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant
rs1021007	Chr1:80155014(Fwd)
rs1108929	Chr1:34332933(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant
rs11162796	Chr1:80167852(Fwd)
rs2273570	Chr1:34335985(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant
rs11162799	Chr1:80175025(Fwd)
rs1321628	Chr1:34342748(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs1568763	Chr1:80177671(Fwd)
rs6425855	Chr1:34346361(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs12759401	Chr1:115809848(Fwd)
rs1976881	Chr1:80178000(Fwd)
rs724123	Chr1:34348807(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs2982742	Chr1:115818779(Fwd)
rs1524183	Chr1:80179889(Fwd)
rs12060795	Chr1:34355168(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant
rs2068797	Chr1:115821085(Fwd)	upstream_gene_variant
rs1524182	Chr1:80180075(Fwd)
rs16835742	Chr1:34180842(Fwd)	NMD_transcript_variant; intron_variant
rs2747063	Chr1:115830631(Fwd)	intron_variant; nc_transcript_variant
rs1524178	Chr1:80187874(Fwd)
rs2031476	Chr1:34277722(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs1589752	Chr1:80190647(Fwd)
rs1325241	Chr1:34278562(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs10874061	Chr1:80195629(Fwd)
rs3856129	Chr1:34279742(Fwd)	5_prime_UTR_variant; NMD_transcript_variant; intron_variant; nc_transcript_variant
rs6413808	Chr1:80197401(Fwd)
rs746667	Chr1:34312179(Fwd)	NMD_transcript_variant; intron_variant
rs10874062	Chr1:80198645(Fwd)
rs10753290	Chr1:34291781(Fwd)	NMD_transcript_variant; intron_variant
rs1404064	Chr1:80203708(Fwd)
rs10874069	Chr1:80225158(Fwd)
rs1404065	Chr1:80203935(Fwd)
rs1524170	Chr1:80231509(Fwd)
rs10874067	Chr1:80207766(Fwd)
rs12023106	Chr1:202365332(Fwd)	NMD_transcript_variant; intron_variant
rs10493650	Chr1:80207928(Fwd)
rs3767427	Chr1:202388644(Fwd)	NMD_transcript_variant; intron_variant
rs7532099	Chr1:80218925(Fwd)
rs10158100	Chr1:202394199(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs1464732	Chr1:80220979(Fwd)
rs10159280	Chr1:202394287(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs10874058	Chr1:80147007(Fwd)
rs10800836	Chr1:202410429(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs2103119	Chr1:80197572(Fwd)
rs3767425	Chr1:202413840(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs12724123	Chr1:80146951(Fwd)
rs2362282	Chr1:202440936(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs7541447	Chr1:80148942(Fwd)
rs1806606	Chr1:202442385(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs10874064	Chr1:80207353(Fwd)
rs10920410	Chr1:202445856(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs1832719	Chr1:202447026(Fwd)	intron_variant; nc_transcript_variant
rs6679552	Chr1:202449586(Fwd)	intron_variant; nc_transcript_variant
rs3753908	Chr1:202511295(Fwd)	intron_variant; nc_transcript_variant
rs3767404	Chr1:202519900(Fwd)	intron_variant; nc_transcript_variant
rs10800840	Chr1:202529062(Fwd)	intron_variant; nc_transcript_variant
rs2249811	Chr1:202531741(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs925532	Chr1:202533880(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs925533	Chr1:202534108(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs3767397	Chr1:202534389(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs2292489	Chr1:202536848(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs967677	Chr1:202548822(Fwd)	intron_variant; nc_transcript_variant
rs2362941	Chr1:202550547(Fwd)	3_prime_UTR_variant; downstream_gene_variant
rs747640	Chr1:202551071(Fwd)	3_prime_UTR_variant; downstream_gene_variant
rs4950859	Chr1:202552839(Fwd)	3_prime_UTR_variant; downstream_gene_variant
rs6427958	Chr1:202564330(Fwd)	3_prime_UTR_variant
rs1467120	Chr1:202569877(Fwd)	intron_variant; upstream_gene_variant
rs10494834	Chr1:202566430(Fwd)	intron_variant
rs6666325	Chr1:202567272(Fwd)	intron_variant
rs12142095	Chr1:84732779(Fwd)
rs17454292	Chr1:80059329(Fwd)
rs2037617	Chr1:80217533(Fwd)
rs12733192	Chr1:113310418(Fwd)
rs1524180	Chr1:80183641(Fwd)
rs7553091	Chr1:113293449(Fwd)	downstream_gene_variant
rs12758837	Chr1:113311633(Fwd)
rs10857975	Chr1:113321594(Fwd)
rs11584214	Chr1:113281211(Fwd)
rs6683234	Chr1:113298765(Fwd)
rs6686669	Chr1:113329866(Fwd)
rs6682219	Chr1:113333886(Fwd)
rs6681499	Chr1:113336905(Fwd)
rs4381183	Chr1:113286449(Fwd)	upstream_gene_variant
rs4534375	Chr1:113286780(Fwd)	upstream_gene_variant
rs1040010	Chr1:202560412(Fwd)	3_prime_UTR_variant; downstream_gene_variant
rs504261	Chr1:202565948(Fwd)	synonymous_variant
rs907698	Chr1:202569154(Fwd)	intron_variant; upstream_gene_variant
rs4846049	Chr1:11850365(Fwd)	3_prime_UTR_variant; downstream_gene_variant
rs6540999	Chr1:11833366(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs11121828	Chr1:11834454(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs7538516	Chr1:11836682(Fwd)	downstream_gene_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant
rs648685	Chr1:191428729(Fwd)
rs6697244	Chr1:11838848(Fwd)	downstream_gene_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant
rs6666273	Chr1:191428753(Fwd)
rs4845882	Chr1:11843167(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs7544068	Chr1:115854328(Fwd)	intron_variant; nc_transcript_variant
rs6693503	Chr1:19987294(Fwd)	downstream_gene_variant; upstream_gene_variant
rs3818762	Chr1:11851003(Fwd)	downstream_gene_variant; intron_variant
rs4529705	Chr1:115851491(Fwd)	intron_variant; nc_transcript_variant
rs10917509	Chr1:19992066(Fwd)	5_prime_UTR_variant
rs1476413	Chr1:11852300(Fwd)	downstream_gene_variant; intron_variant
rs4454548	Chr1:115852004(Fwd)	intron_variant; nc_transcript_variant
rs4912141	Chr1:20001896(Fwd)	intron_variant
rs12121543	Chr1:11854671(Fwd)	intron_variant
rs4644491	Chr1:115852984(Fwd)	intron_variant; nc_transcript_variant
rs10917513	Chr1:20006887(Fwd)	downstream_gene_variant
rs1994798	Chr1:11854755(Fwd)	intron_variant
rs11102922	Chr1:115856078(Fwd)	intron_variant; nc_transcript_variant
rs6695697	Chr1:23553225(Fwd)
rs1883565	Chr1:20008507(Fwd)	downstream_gene_variant
rs6541003	Chr1:11855867(Fwd)	intron_variant
rs12145726	Chr1:115857251(Fwd)	intron_variant; nc_transcript_variant
rs4654837	Chr1:23560000(Fwd)
rs10917517	Chr1:20012762(Fwd)	intron_variant; nc_transcript_variant
rs4846052	Chr1:11857951(Fwd)	downstream_gene_variant; intron_variant
rs7533981	Chr1:20014739(Fwd)	intron_variant; nc_transcript_variant
rs4846054	Chr1:11869230(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs7527271	Chr1:20014753(Fwd)	intron_variant; nc_transcript_variant
rs12406667	Chr1:11873851(Fwd)	intron_variant; nc_transcript_variant
rs7543480	Chr1:20014827(Fwd)	feature_truncation; intron_variant; nc_transcript_variant
rs12404124	Chr1:11873869(Fwd)	intron_variant; nc_transcript_variant
rs10159394	Chr1:20015955(Fwd)	intron_variant; nc_transcript_variant
rs198391	Chr1:11876417(Fwd)	intron_variant; nc_transcript_variant
rs2050121	Chr1:20016849(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs198393	Chr1:11879685(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs4912018	Chr1:20017721(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs198399	Chr1:11883629(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs4520471	Chr1:202564221(Fwd)	3_prime_UTR_variant
rs10917518	Chr1:20017738(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs1340986	Chr1:75089200(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs198401	Chr1:11888384(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs6700295	Chr1:202575620(Fwd)	downstream_gene_variant; intron_variant
rs3748749	Chr1:20018300(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs730645	Chr1:75118172(Fwd)	intron_variant
rs535107	Chr1:11889468(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs3767392	Chr1:202547101(Fwd)	intron_variant; nc_transcript_variant
rs4515815	Chr1:20020994(Fwd)	missense_variant; nc_transcript_variant; non_coding_exon_variant
rs1417586	Chr1:75088911(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant
rs503040	Chr1:11890695(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs4240542	Chr1:115847546(Fwd)	intron_variant; nc_transcript_variant
rs624818	Chr1:75126646(Fwd)	intron_variant
rs198406	Chr1:11897592(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs3911348	Chr1:75019042(Fwd)
rs198408	Chr1:11898130(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs3931879	Chr1:75030642(Fwd)	downstream_gene_variant
rs1023252	Chr1:11899033(Fwd)	downstream_gene_variant; intron_variant; missense_variant; upstream_gene_variant
rs2344506	Chr1:75040059(Fwd)	feature_truncation; intron_variant; nc_transcript_variant
rs6541001	Chr1:11837367(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant
rs696686	Chr1:75046402(Fwd)	intron_variant; upstream_gene_variant
rs696687	Chr1:75046829(Fwd)	intron_variant; upstream_gene_variant
rs696688	Chr1:75051340(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs696694	Chr1:75060313(Fwd)	intron_variant; nc_transcript_variant
rs696699	Chr1:75068061(Fwd)	intron_variant; nc_transcript_variant
rs696700	Chr1:75069093(Fwd)	intron_variant; nc_transcript_variant
rs696702	Chr1:75072038(Fwd)	intron_variant; nc_transcript_variant
rs699849	Chr1:75074988(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs10493454	Chr1:69659840(Fwd)
rs12354333	Chr1:202604386(Fwd)	downstream_gene_variant; intron_variant
rs11209404	Chr1:69680378(Fwd)
rs11585137	Chr1:202606005(Fwd)	downstream_gene_variant; intron_variant
rs11585535	Chr1:202606051(Fwd)	downstream_gene_variant; intron_variant
rs1934663	Chr1:202608952(Fwd)	intron_variant
rs7548692	Chr1:23354877(Fwd)	intron_variant; nc_transcript_variant
rs11578046	Chr1:23425139(Fwd)	intron_variant
rs643492	Chr1:23501354(Fwd)	intron_variant
rs1738467	Chr1:23506521(Fwd)	upstream_gene_variant

Gene (count: 247)

Literature-origin genes (count: 12)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
HTR1D	5-hydroxytryptamine (serotonin) receptor 1D	1p36.3-p34.3	2(1/1/0)
HTR6	5-hydroxytryptamine (serotonin) receptor 6	1p36-p35	2(0/2/0)
NGF	nerve growth factor (beta polypeptide)	1p13.1	2(2/0/0)
GNAT2	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2	1p13	1(1/0/0)
LMO4	LIM domain only 4	1p22.3	1(0/1/0)
RGS18	regulator of G-protein signaling 18	1q31.2	1(0/1/0)
NEGR1	neuronal growth regulator 1	1p31.1	1(1/0/0)
USP24	ubiquitin specific peptidase 24	1p32.3	1(1/0/0)
C1orf173	chromosome 1 open reading frame 173	1p31.1	1(0/1/0)
CSMD2	CUB and Sushi multiple domains 2	1p34.3	1(0/0/1)
MTHFR	methylenetetrahydrofolate reductase (NAD(P)H)	1p36.3	1(0/1/0)
SYT2	synaptotagmin II	1q32.1	1(1/0/0)

Genes from other sources (count: 235)

Approved Symbol	Approved Name	Location
OR2W3	olfactory receptor, family 2, subfamily W, member 3	1q44
OR2W5	olfactory receptor, family 2, subfamily W, member 5	1q44
OR2X1P	olfactory receptor, family 2, subfamily X, member 1 pseudogene	1
NEXN	nexilin (F actin binding protein)	1p31.1
IER5	immediate early response 5	1q25.3
FAM108A2	family with sequence similarity 108, member A2	1q21.2
TAF13	TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa	1p13.3
RPS27P7	ribosomal protein S27 pseudogene 7	1q25.1
RPS29P4	ribosomal protein S29 pseudogene 4	1q24-q25
RPS29P5	ribosomal protein S29 pseudogene 5	1q25.1-q25.2
FCGR2A	Fc fragment of IgG, low affinity IIa, receptor (CD32)	1q23
FCGR2B	Fc fragment of IgG, low affinity IIb, receptor (CD32)	1q23
FCGR2C	Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)	1q23
PLA2G2A	phospholipase A2, group IIA (platelets, synovial fluid)	1p35
FCGR3A	Fc fragment of IgG, low affinity IIIa, receptor (CD16a)	1q23
PLA2G2D	phospholipase A2, group IID	1p36.12
FCGR3B	Fc fragment of IgG, low affinity IIIb, receptor (CD16b)	1q23
PLA2G2E	phospholipase A2, group IIE	1p36.13
FCRLA	Fc receptor-like A	1q23.3
FCRLB	Fc receptor-like B	1q23.3
C1orf167	chromosome 1 open reading frame 167	1p36.22
PLA2G5	phospholipase A2, group V	1p36-p34
RPS3AP8	ribosomal protein S3a pseudogene 8	1q25
FMO5	flavin containing monooxygenase 5	1q21.1
TMEM167B	transmembrane protein 167B	1p13.3
STX6	syntaxin 6	1q25.3
RABGAP1L	RAB GTPase activating protein 1-like	1q24
SWT1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)	1q25
VDAC1P4	voltage-dependent anion channel 1 pseudogene 4	1q24-q25
CLCN6	chloride channel 6	1p36
OR6F1	olfactory receptor, family 6, subfamily F, member 1	1q44
OR6R1P	olfactory receptor, family 6, subfamily R, member 1 pseudogene	1
TRIM58	tripartite motif containing 58	1q44
PPIH	peptidylprolyl isomerase H (cyclophilin H)	1p34.1
OR9H1P	olfactory receptor, family 9, subfamily H, member 1 pseudogene	1
MR1	major histocompatibility complex, class I-related	1q25.3
GJA5	gap junction protein, alpha 5, 40kDa	1q21.1
GJA8	gap junction protein, alpha 8, 50kDa	1q21.1
LOC100506310	uncharacterized protein C1orf167-like [MODEL Refseq, protein coding]	1p36
ACP6	acid phosphatase 6, lysophosphatidic	1q21
RCC1	regulator of chromosome condensation 1	1p35.3
RER1	RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	1p36
TRNAD20P	transfer RNA aspartic acid 20 (anticodon GUC) pseudogene	1q23.3
MRPS14	mitochondrial ribosomal protein S14	1q25.1
AKNAD1	AKNA domain containing 1	1p13.3
TRNAE32P	transfer RNA glutamic acid 32 (anticodon UUC) pseudogene	1q21.2
TRNAE34P	transfer RNA glutamic acid 34 (anticodon UUC) pseudogene	1q21.1
FAM202A	family with sequence similarity 202, member A	1q32.1
GPR89B	G protein-coupled receptor 89B	1q21.1
PDIA3P	protein disulfide isomerase family A, member 3 pseudogene	1q21
SCAMP3	secretory carrier membrane protein 3	1q21
RC3H1	ring finger and CCCH-type domains 1	1q25.1
PDZK1P2	PDZ domain containing 1 pseudogene 2	1q21.1
TRNAE8	transfer RNA glutamic acid 8 (anticodon UUC)	1
SEC22B	SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)	1q21.1
GPSM2	G-protein signaling modulator 2	1p13.3
TRNAG31	transfer RNA glycine 31 (anticodon GCC)	1
TRNAG8	transfer RNA glycine 8 (anticodon UCC)	1
TRNAH10	transfer RNA histidine 10 (anticodon GUG)	1
TRNAH7	transfer RNA histidine 7 (anticodon GUG)	1
SF3A3	splicing factor 3a, subunit 3, 60kDa	1p
TRNAH9	transfer RNA histidine 9 (anticodon GUG)	1
SF3B4	splicing factor 3b, subunit 4, 49kDa	1q21.2
TRNAL3	transfer RNA leucine 3 (anticodon CAA)	1
KIAA0040	KIAA0040	1q24-q25
TRNAL45P	transfer RNA leucine 45 (anticodon UAA) pseudogene	1q43
PPP1R12B	protein phosphatase 1, regulatory (inhibitor) subunit 12B	1q32.1
RFWD2	ring finger and WD repeat domain 2	1q25.1-q25.2
TRNAL6	transfer RNA leucine 6 (anticodon CAG)	1
ATF6	activating transcription factor 6	1q22-q23
TRNAN12	transfer RNA asparagine 12 (anticodon GUU)	1
SCARNA3	small Cajal body-specific RNA 3	1q25.1
TRNAN14	transfer RNA asparagine 14 (anticodon GUU)	1
RGL1	ral guanine nucleotide dissociation stimulator-like 1	1q25.2
TRNAN19	transfer RNA asparagine 19 (anticodon GUU)	1
RGS16	regulator of G-protein signaling 16	1q25-q31
TRNAN26	transfer RNA asparagine 26 (anticodon AUU)	1
HMGB4	high mobility group box 4	1p35.1
FTH1P25	ferritin, heavy polypeptide 1 pseudogene 25	1q25.3
TRNAP23P	transfer RNA proline 23 (anticodon UGG) pseudogene	1q43
RGS8	regulator of G-protein signaling 8	1q25
TRNAQ13	transfer RNA glutamine 13 (anticodon CUG)	1
KIAA1614	KIAA1614	1q25.3
RGSL1	regulator of G-protein signaling like 1	1q25
TRNAQ26	transfer RNA glutamine 26 (anticodon CUG)	1
XPR1	xenotropic and polytropic retrovirus receptor 1	1q25.1
TRNAQ3	transfer RNA glutamine 3 (anticodon CUG)	1
TRNAQ51P	transfer RNA glutamine 51 (anticodon CUG) pseudogene	1q21.2
HSD17B7P1	hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 1	1q44
TRNAQ8	transfer RNA glutamine 8 (anticodon CUG)	1
TRNAR31P	transfer RNA arginine 31 (anticodon CCU) pseudogene	1q21.2
TEDDM1	transmembrane epididymal protein 1	1q25.3
HSPA6	heat shock 70kDa protein 6 (HSP70B')	1q23.3
PRKAB2	protein kinase, AMP-activated, beta 2 non-catalytic subunit	1q21.2
BCL9	B-cell CLL/lymphoma 9	1q21
HSPA7	heat shock 70kDa protein 7 (HSP70B)	1q23.3
STMN1	stathmin 1	1p36.11
RNASEL	ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)	1q25
KLHL20	kelch-like 20 (Drosophila)	1q25.1
SDCCAG3P2	serologically defined colon cancer antigen 3 pseudogene 2	1q25.1
THRAP3	thyroid hormone receptor associated protein 3	1p34.3
ZBTB37	zinc finger and BTB domain containing 37	1q24.2
KDM1A	lysine (K)-specific demethylase 1A	1p36.12
PSRC1	proline/serine-rich coiled-coil 1	1p13.3
RNF2	ring finger protein 2	1q25.3
SERPINC1	serpin peptidase inhibitor, clade C (antithrombin), member 1	1q23-q25.1
KRT18P28	keratin 18 pseudogene 28	1q25.3
LUZP1	leucine zipper protein 1	1p36
GAS5	growth arrest-specific 5 (non-protein coding)	1q25.1
NCF2	neutrophil cytosolic factor 2	1q25
WDR47	WD repeat domain 47	1p13.3
DARS2	aspartyl-tRNA synthetase 2, mitochondrial	1q25.1
KIAA1324	KIAA1324	1p13.3
RNU7-13P	RNA, U7 small nuclear 13 pseudogene	1q25.3
SHCBP1L	SHC SH2-domain binding protein 1-like	1q25
C1orf100	chromosome 1 open reading frame 100	1q44
NCRNA00272	non-protein coding RNA 272	1q25.3
C1orf150	chromosome 1 open reading frame 150	1q44
KRT18P32	keratin 18 pseudogene 32	1q43
CACNA1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	1q25-q31
C1orf194	chromosome 1 open reading frame 194	1p13.3
LAMC1	laminin, gamma 1 (formerly LAMB2)	1q31
C1orf229	chromosome 1 open reading frame 229	1q44
LAMC2	laminin, gamma 2	1q25-q31
C1orf21	chromosome 1 open reading frame 21	1q25
IVNS1ABP	influenza virus NS1A binding protein	1q25.1-q31.1
GLT25D2	glycosyltransferase 25 domain containing 2	1q25
GLUL	glutamate-ammonia ligase	1q31
PRDX6	peroxiredoxin 6	1q24.1
ZNF669	zinc finger protein 669	1q44
RNU1-6	RNA, U1 small nuclear 6	1q21.2
ZNF670	zinc finger protein 670	1q44
DHX9	DEAH (Asp-Glu-Ala-His) box polypeptide 9	1q25
ZNF648	zinc finger protein 648	1q25.3
RPL17P7	ribosomal protein L17 pseudogene 7	1p13.3
NBL1	neuroblastoma, suppression of tumorigenicity 1	1p36.3-p36.2
MASP2	mannan-binding lectin serine peptidase 2	1p36.3-p36.2
RPL18P2	ribosomal protein L18 pseudogene 2	1q25.3
RPL31P11	ribosomal protein L31 pseudogene 11	1q23.3
PTPN14	protein tyrosine phosphatase, non-receptor type 14	1q32.2
ZP4	zona pellucida glycoprotein 4	1q43
ACBD6	acyl-CoA binding domain containing 6	1q25.1
TNFSF18	tumor necrosis factor (ligand) superfamily, member 18	1q23
TNFSF4	tumor necrosis factor (ligand) superfamily, member 4	1q25
NMNAT2	nicotinamide nucleotide adenylyltransferase 2	1q25
RPL39P10	ribosomal protein L39 pseudogene 10	1q43
MIPEPP2	mitochondrial intermediate peptidase pseudogene 2	1q43
TARDBP	TAR DNA binding protein	1p36.22
GOT2P2	glutamic-oxaloacetic transaminase 2 pseudogene 2	1q25.1
TNN	tenascin N	1q23-q24
RPL7AP15	ribosomal protein L7a pseudogene 15	1q12
TNR	tenascin R (restrictin, janusin)	1q24
CCT8P1	chaperonin containing TCP1, subunit 8 (theta) pseudogene 1	1q21.1
CHRM3	cholinergic receptor, muscarinic 3	1q41-q44
SLC9A11	solute carrier family 9, member 11	1q25.1
ARHGEF10L	Rho guanine nucleotide exchange factor (GEF) 10-like	1p36.13
RYR2	ryanodine receptor 2 (cardiac)	1q43
ARHGEF2	Rho/Rac guanine nucleotide exchange factor (GEF) 2	1q21-q22
RPS27P6	ribosomal protein S27 pseudogene 6	1p13.3
BCAS2	breast carcinoma amplified sequence 2	1p13.2
GPR52	G protein-coupled receptor 52	1q24
NPL	N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)	1q25
CELSR2	cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	1p13.3
SMG7	smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	1q25
CACNA1S	calcium channel, voltage-dependent, L type, alpha 1S subunit	1q32
RPL26P11	ribosomal protein L26 pseudogene 11	1q25.1
CHD1L	chromodomain helicase DNA binding protein 1-like	1q21.1
EDEM3	ER degradation enhancer, mannosidase alpha-like 3	1q25
CLCC1	chloride channel CLIC-like 1	1p13.3
SARS	seryl-tRNA synthetase	1p13.3
CACYBP	calcyclin binding protein	1q24-q25
RPL30P1	ribosomal protein L30 pseudogene 1	1q25.1
MTRNR2L11	MT-RNR2-like 11 (pseudogene)	1q42.3
SCARNA2	small Cajal body-specific RNA 2	1q13.1
TRMT1L	TRM1 tRNA methyltransferase 1-like	1q25.2
MYBPHL	myosin binding protein H-like	1p13
COG2	component of oligomeric golgi complex 2	1q42.2
NBPF13P	neuroblastoma breakpoint family, member 13, pseudogene	1q21.1
NBPF24	neuroblastoma breakpoint family, member 24	1q21.1
RPS27P8	ribosomal protein S27 pseudogene 8	1q32.1
ANKRD45	ankyrin repeat domain 45	1q25.1
NDUFB3P1	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 1	1p13.3
SNORD44	small nucleolar RNA, C/D box 44	1q25.1
HMCN1	hemicentin 1	1q25.3-q31.1
RPL5P5	ribosomal protein L5 pseudogene 5	1q25.3
SNORD47	small nucleolar RNA, C/D box 47	1q25.1
NOS1AP	nitric oxide synthase 1 (neuronal) adaptor protein	1q23.3
TSEN15	tRNA splicing endonuclease 15 homolog (S. cerevisiae)	1q25
APOBEC4	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	1q25.3
SNORD74	small nucleolar RNA, C/D box 74	1q25.1
OLFML2B	olfactomedin-like 2B	1q23.1
HMGN1P4	high mobility group nucleosome binding domain 1 pseudogene 4	1q25.3
SNORD75	small nucleolar RNA, C/D box 75	1q25.1
SNORD76	small nucleolar RNA, C/D box 76	1q25.1
SNORD77	small nucleolar RNA, C/D box 77	1q25.1
SNORD78	small nucleolar RNA, C/D box 78	1q25.1
SNORD79	small nucleolar RNA, C/D box 79	1q25.1
MIR3121	microRNA 3121	1
SNORD80	small nucleolar RNA, C/D box 80	1q25.1
SNORD81	small nucleolar RNA, C/D box 81	1q25.1
OR11L1	olfactory receptor, family 11, subfamily L, member 1	1
OR13G1	olfactory receptor, family 13, subfamily G, member 1	1q44
KIF2C	kinesin family member 2C	1p34.1
OR13Z1P	olfactory receptor, family 13, subfamily Z, member 1 pseudogene	1
SORT1	sortilin 1	1p13.3
OR13Z2P	olfactory receptor, family 13, subfamily Z, member 2 pseudogene	1
OR13Z3P	olfactory receptor, family 13, subfamily Z, member 3 pseudogene	1q21.1
OR14A16	olfactory receptor, family 14, subfamily A, member 16	1q44
OR14K1	olfactory receptor, family 14, subfamily K, member 1	1q44
OR1C1	olfactory receptor, family 1, subfamily C, member 1	1q44
FAM129A	family with sequence similarity 129, member A	1q25
OR2AJ1	olfactory receptor, family 2, subfamily AJ, member 1	1q44
TMCO4	transmembrane and coiled-coil domains 4	1p36.13
OR2AK2	olfactory receptor, family 2, subfamily AK, member 2	1q44
OR2C3	olfactory receptor, family 2, subfamily C, member 3	1q44
ARPC5	actin related protein 2/3 complex, subunit 5, 16kDa	1q
DUSP12	dual specificity phosphatase 12	1q21-q22
OR2G2	olfactory receptor, family 2, subfamily G, member 2	1q44
OR2G3	olfactory receptor, family 2, subfamily G, member 3	1q44
OR2L13	olfactory receptor, family 2, subfamily L, member 13	1q44
OR2L2	olfactory receptor, family 2, subfamily L, member 2	1q44
OR2L3	olfactory receptor, family 2, subfamily L, member 3	1q44
OR2L8	olfactory receptor, family 2, subfamily L, member 8	1q44
EDARADD	EDAR-associated death domain	1q42.3
OR2L9P	olfactory receptor, family 2, subfamily L, member 9 pseudogene	1
STXBP3	syntaxin binding protein 3	1p13.3
OR2M2	olfactory receptor, family 2, subfamily M, member 2	1q44
OR2M3	olfactory receptor, family 2, subfamily M, member 3	1q44
CENPL	centromere protein L	1q25.1
OR2M4	olfactory receptor, family 2, subfamily M, member 4	1q44
OR2M5	olfactory receptor, family 2, subfamily M, member 5	1q44
OR2T12	olfactory receptor, family 2, subfamily T, member 12	1q44
OR2T33	olfactory receptor, family 2, subfamily T, member 33	1q44
RPS26P12	ribosomal protein S26 pseudogene 12	1q24
OR2T8	olfactory receptor, family 2, subfamily T, member 8	1q44

Region (count: 3)

Region Name	Location	No. of Studies (postive/negative/trend)
1p36	chr1:0-28000000	1 (0/1/0)
1q25.1	chr1:172900000-176000000	1 (1/0/0)
1q25.3	chr1:180300000-185800000	1 (1/0/0)

View in gBrowse

Region: chr1:0..249250621 View in gBrowse
(The coordinate of the CNV has been transformed to NCBI Build 37 (hg19) in gBrowse)