SNP Report
Basic Info
Name |
rs4147141
dbSNP
Ensembl
|
Location |
Chr1:69579252(Fwd) |
Variant Alleles |
G/A |
Ancestral Allele |
G |
Functional Annotation |
intron_variant; nc_transcript_variant.
|
Consequence to Transcript |
intron_variant(ENST00000425517) nc_transcript_variant(ENST00000425517) |
No. of Studies |
1 (significant: 0; non-significant: 0; trend: 1) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 0)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 14)
rs_ID |
Functional Annotation |
r2[population] |
rs6424497
|
intron_variant; nc_transcript_variant |
0.96[YRI]
|
rs9662151
|
intron_variant; nc_transcript_variant |
0.88[CEU]
|
rs6671705
|
intron_variant; nc_transcript_variant |
1.0[YRI]
|
rs11209396
|
intron_variant; nc_transcript_variant |
0.961[YRI]
|
rs10889800
|
intron_variant; nc_transcript_variant |
0.911[YRI]
|
rs1336161
|
intron_variant; nc_transcript_variant |
0.961[CEU]; 0.865[JPT]; 0.961[YRI]
|
rs1414661
|
intron_variant; nc_transcript_variant |
0.865[JPT]
|
rs11209388
|
intron_variant; nc_transcript_variant |
0.83[YRI]
|
rs12758008
|
intron_variant; nc_transcript_variant |
0.885[YRI]
|
rs12033101
|
intron_variant; nc_transcript_variant |
0.959[YRI]
|
rs4650112
|
intron_variant; nc_transcript_variant |
0.808[CEU]; 0.953[JPT]
|
rs6663863
|
intron_variant; nc_transcript_variant |
1.0[YRI]
|
rs950492
|
intron_variant; nc_transcript_variant |
0.961[CEU]; 0.912[JPT]
|
rs11209397
|
intron_variant; nc_transcript_variant |
1.0[CEU]; 0.905[JPT]; 0.957[YRI]
|