ADHDgene Database

SNP Report

Basic Info

Name	rs931992 dbSNP Ensembl
Location	Chr17:37821435(Fwd)
Variant Alleles	G/T
Ancestral Allele	G
Functional Annotation	5_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript	5_prime_UTR_variant(ENST00000309889) downstream_gene_variant(ENST00000336308; ENST00000471896; ENST00000584850; ENST00000394250; ENST00000585269; ENST00000544210; ENST00000583639; ENST00000578384; ENST00000578686; ENST00000583884; ENST00000481171; ENST00000580611; ENST00000578577; ENST00000488876) upstream_gene_variant(ENST00000581428; ENST00000269582; ENST00000578283; ENST00000394246; LRG_210_t1)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PNMT	phenylethanolamine N-methyltransferase	17q	3(2/1/0)

Approved Symbol	Approved Name	Location
STARD3	StAR-related lipid transfer (START) domain containing 3	17q11-q12
TCAP	titin-cap (telethonin)	17q12

SNPs in LD with rs931992 (count: 5) View in gBrowse (chr17:37781849..37828496 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs3764352	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.879[ASW]; 0.829[CHB]; 0.839[CHD]; 0.895[GIH]; 0.822[JPT]; 0.923[LWK]; 0.954[MKK]
rs2952151	3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.864[CHB]; 0.85[CHD]; 0.905[JPT]; 0.826[TSI]
rs1053651	downstream_gene_variant; synonymous_variant; upstream_gene_variant	1(0/1/0)	0.811[CEU]; 0.954[CHB]; 0.975[CHD]; 0.945[GIH]; 1.0[JPT]; 0.876[MEX]; 0.924[TSI]
rs907094	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.879[ASW]; 0.829[CHB]; 0.839[CHD]; 0.895[GIH]; 0.822[JPT]; 0.923[LWK]; 0.954[MKK]
rs879606	downstream_gene_variant; upstream_gene_variant	1(0/1/0)	0.829[CHB]; 0.81[CHD]; 0.822[JPT]