ADHDgene Database

SNP Report

Basic Info

Name	rs174538 dbSNP Ensembl
Location	Chr11:61560081(Fwd)
Variant Alleles	G/A
Ancestral Allele	G
Functional Annotation	5_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript	5_prime_UTR_variant(ENST00000537328; ENST00000543510; ENST00000535297) NMD_transcript_variant(ENST00000535297) downstream_gene_variant(ENST00000265460; ENST00000278836) upstream_gene_variant(ENST00000574708; ENST00000535042; ENST00000384869; ENST00000540434; ENST00000257262; ENST00000545210; ENST00000535307; ENST00000305885; ENST00000541893; ENST00000535723)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 5)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
FADS2	fatty acid desaturase 2	11q12.2	3(3/0/0)

Approved Symbol	Approved Name	Location
C11orf10	chromosome 11 open reading frame 10	11q12.2
C11orf9	chromosome 11 open reading frame 9	11q12-q13.1
FEN1	flap structure-specific endonuclease 1	11q12
MIR611	microRNA 611	11q12.2

SNPs in LD with rs174538 (count: 3) View in gBrowse (chr11:61560081..61627881 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs174548	5_prime_UTR_variant; intron_variant; nc_transcript_variant	1(0/1/0)	1.0[CHB]; 0.932[CHD]; 0.808[GIH]; 1.0[JPT]
rs174545	3_prime_UTR_variant; downstream_gene_variant; intron_variant	1(0/1/0)	0.874[CEU]; 1.0[CHB]; 1.0[JPT]
rs174611	intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	1.0[YRI]