ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs9870661 dbSNP Ensembl
Location Chr3:143571267(Fwd)
Variant Alleles A/T
Ancestral Allele T
Functional Annotation downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000477300; ENST00000392125)
upstream_gene_variant(ENST00000474151; ENST00000316549; ENST00000474727; ENST00000498717)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Brookes K, 2006 A/T UNPHASED TDT P-value=0.0654; WHAP TDT P-value=0.012 UNPHASED TDT P-value=0.0654; WHAP TDT P-value=0.012 significant association was observed in WHAP analysis significant association was observed in WHAP analysis Significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 1)


SNPs in LD with rs9870661 (count: 34) View in gBrowse (chr3:143551822..143583002 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 2)

LD-proxies (count: 32)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014