ADHDgene Database

SNP Report

Basic Info

Name	rs890 dbSNP Ensembl
Location	Chr12:13715308(Fwd)
Variant Alleles	A/C
Ancestral Allele	A
Functional Annotation	3_prime_UTR_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000279593)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Dorval KM, 2007	A/C	A	Allelic TDT P-value=0.417 Allelic TDT P-value=0.417	No biased transmission No biased transmission	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
GRIN2B	glutamate receptor, ionotropic, N-methyl D-aspartate 2B	12p12	1(1/0/0)

SNPs in LD with rs890 (count: 11) View in gBrowse (chr12:13688908..13723977 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs12814951	downstream_gene_variant	1.0[ASW]; 1.0[CHB]; 0.952[CHD]; 0.973[GIH]; 0.91[JPT]; 1.0[LWK]; 0.871[MEX]; 0.857[MKK]; 0.826[TSI]; 1.0[YRI]
rs1806202	intron_variant	0.95[CHD]; 0.904[JPT]
rs1806213	intron_variant	0.95[CHD]; 0.904[JPT]
rs12580557	intron_variant; nc_transcript_variant	0.813[JPT]
rs1806192	intron_variant	0.904[CHD]; 0.904[JPT]
rs17820659	intron_variant; nc_transcript_variant	0.813[JPT]
rs12582975	intron_variant; nc_transcript_variant	0.813[JPT]
rs4522263	downstream_gene_variant	0.904[CHD]; 0.904[JPT]
rs10772692	intron_variant	0.883[CEU]; 0.801[GIH]; 0.956[MEX]; 0.871[TSI]
rs3026173	downstream_gene_variant	0.904[JPT]
rs2268092	intron_variant	0.952[CHD]; 0.904[JPT]