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ADHDgene Database
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Keyword:
Type:
SNP
Gene
Region
Pathway
Study(PMID)
Large-scale studies
Genome-wide Association Studies of ADHD
Genome-wide Linkage Studies of ADHD
Genome-wide CNV Analyses of ADHD
Meta-analysis Studies of ADHD
Data Summary
Published Variant
SNP:
1391
CNV:
398
Others:
173
Published Gene:
359
Published Region:
128
Pathway by PBA:
8
Study:
361
Detail ...
SNP Report
Basic Info
Name
rs6570426
dbSNP
Ensembl
Location
Chr6:141197346(Fwd)
Variant Alleles
A/T
Ancestral Allele
A
No. of Studies
2 (significant: 0; non-significant: 2; trend: 0)
Source
Literature-origin
SNP related studies (count: 2)
Reference
Allele Change
Risk Allele
Statistical Values
Author Comments
Result of Statistical Analysis
Neale BM, 2008
T:A
Corrected TDT P-value=2.74E-05 (OR=0.735)
Corrected TDT P-value=2.74E-05 (OR=0.735)
One of top 25 results in corrected TDT test
One of top 25 results in corrected TDT test
Non-significant
Lantieri F, 2010
T:A
Binomial P-value=0.59, OR=1.02 for whole sample; Binomial P-......
Binomial P-value=0.59, OR=1.02 for whole sample; Binomial P-value=0.61, OR=1.03 for C-subtype
More...
no significant association
no significant association
Non-significant
SNP related genes (count: 0)
SNPs in LD with rs6570426 (count: 33)
View in gBrowse (chr6:141133003..141219060 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold
r
2
>=0.8.
Literature-origin SNPs (count: 1)
rs_ID
Functional Annotation
#studies(significant/non-significant/trend)
r
2
[population]
rs9484448
2(0/2/0)
0.867[CEU]; 0.897[TSI]
LD-proxies (count: 32)
rs_ID
Functional Annotation
r
2
[population]
rs687879
downstream_gene_variant
0.824[YRI]
rs644443
0.824[YRI]
rs12204980
1.0[CEU]; 0.948[TSI]
rs584727
0.824[YRI]
rs643558
0.824[YRI]
rs681758
0.859[YRI]
rs609656
0.824[YRI]
rs665541
0.816[YRI]
rs13194620
0.937[CEU]; 0.844[JPT]; 0.96[YRI]
rs647875
0.858[CEU]
rs623571
0.824[YRI]
rs1521150
1.0[CEU]; 1.0[CHB]; 0.939[JPT]
rs672301
0.824[YRI]
rs687815
intron_variant; nc_transcript_variant
0.824[YRI]
rs849294
1.0[CEU]; 1.0[CHB]; 0.939[JPT]; 1.0[YRI]
rs626931
upstream_gene_variant
0.824[YRI]
rs582203
0.859[CEU]
rs594761
downstream_gene_variant
0.824[YRI]
rs644638
downstream_gene_variant
0.834[YRI]
rs627812
0.824[YRI]
rs677319
upstream_gene_variant
0.82[YRI]
rs6917444
0.88[ASW]; 1.0[CEU]; 1.0[CHB]; 0.967[CHD]; 1.0[GIH]; 0.939[JPT]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs672906
intron_variant; nc_transcript_variant
0.819[YRI]
rs12524925
0.88[ASW]; 1.0[CEU]; 1.0[CHB]; 0.966[CHD]; 1.0[GIH]; 0.939[JPT]; 1.0[MEX]; 0.984[MKK]; 1.0[TSI]; 1.0[YRI]
rs618795
downstream_gene_variant
0.824[YRI]
rs596721
intron_variant; nc_transcript_variant
0.824[YRI]
rs620151
downstream_gene_variant
0.824[YRI]
rs664281
intron_variant; nc_transcript_variant
0.819[YRI]
rs650907
0.824[YRI]
rs647781
0.824[YRI]
rs637822
0.819[YRI]
rs630983
downstream_gene_variant
0.824[YRI]