ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs6100796 dbSNP Ensembl
Location	Chr20:58800873(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000458422; ENST00000432910; ENST00000437035; ENST00000431181; ENST00000421257; ENST00000427820) nc_transcript_variant(ENST00000458422; ENST00000432910; ENST00000437035; ENST00000431181; ENST00000421257; ENST00000427820)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (a)	T:C		P-value=2.03E-05 P-value=2.03E-05	one of top 50 hits from the Genome-Wide Attention-Deficit/Hy...... one of top 50 hits from the Genome-Wide Attention-Deficit/Hyperactivity Disorder (ADHD) meta-analysis More...	Trend

SNP related genes (count: 0)

SNPs in LD with rs6100796 (count: 24) View in gBrowse (chr20:58797699..58827268 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 3)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2865793	intron_variant; nc_transcript_variant	1(0/0/1)	1.0[ASW]; 1.0[CEU]; 1.0[GIH]; 1.0[LWK]; 0.947[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs1535028	intron_variant; nc_transcript_variant	1(0/0/1)	0.811[MEX]
rs7271202	intron_variant; nc_transcript_variant	1(0/0/1)	0.937[ASW]; 1.0[CEU]; 1.0[CHB]; 0.924[CHD]; 1.0[GIH]; 1.0[JPT]; 0.934[LWK]; 0.947[MEX]; 0.832[MKK]; 1.0[TSI]; 0.96[YRI]

LD-proxies (count: 21)

rs_ID	Functional Annotation	r²[population]
rs6100820	intron_variant; nc_transcript_variant	0.94[CEU]; 0.946[JPT]
rs6100803	intron_variant; nc_transcript_variant	1.0[CEU]
rs6027423	intron_variant; nc_transcript_variant	0.943[JPT]
rs6027437	intron_variant; nc_transcript_variant	0.943[CEU]; 0.898[MEX]; 0.879[TSI]
rs17791789	downstream_gene_variant; intron_variant; nc_transcript_variant	0.848[CHD]; 0.946[JPT]
rs6015696	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 0.947[JPT]; 0.96[YRI]
rs6027426	intron_variant; nc_transcript_variant	0.937[CEU]; 0.923[CHB]; 1.0[JPT]
rs6027434	intron_variant; nc_transcript_variant	1.0[CEU]; 0.867[GIH]; 0.969[TSI]
rs6027433	intron_variant; nc_transcript_variant	1.0[CEU]
rs6027427	intron_variant; nc_transcript_variant	0.924[CHD]; 0.946[JPT]
rs6100819	intron_variant; nc_transcript_variant	0.943[CEU]; 0.944[JPT]; 0.876[TSI]
rs11696896	intron_variant; nc_transcript_variant	0.924[CHD]; 0.946[JPT]
rs1551763	intron_variant; nc_transcript_variant	1.0[CEU]; 0.959[YRI]
rs6027417	intron_variant; nc_transcript_variant	1.0[CHB]; 0.962[CHD]; 0.946[GIH]; 1.0[JPT]; 0.844[MEX]; 0.879[TSI]
rs6027429	intron_variant; nc_transcript_variant	1.0[CEU]; 0.96[YRI]
rs6027436	intron_variant; nc_transcript_variant	0.893[MEX]; 0.823[TSI]
rs7262838	intron_variant; nc_transcript_variant	0.887[CEU]
rs1381098	intron_variant; nc_transcript_variant	0.837[JPT]
rs6027432	intron_variant; nc_transcript_variant	0.947[MEX]
rs6100836	downstream_gene_variant; intron_variant; nc_transcript_variant	0.831[CEU]
rs6092909	downstream_gene_variant; intron_variant; nc_transcript_variant	0.811[MEX]