ADHDgene Database

SNP Report

Basic Info

Name	rs4944959 dbSNP Ensembl
Location	Chr11:71168234(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000525200; ENST00000529120; ENST00000528509) downstream_gene_variant(ENST00000533612) intron_variant(ENST00000534634; ENST00000524949; ENST00000525245; ENST00000525200; ENST00000527538; ENST00000529120; ENST00000528509; ENST00000319023; ENST00000533769; ENST00000524709) nc_transcript_variant(ENST00000534634; ENST00000524949; ENST00000525245; ENST00000527538; ENST00000533769; ENST00000524709) upstream_gene_variant(ENST00000527452)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DHCR7	7-dehydrocholesterol reductase	11q13.4	1(0/0/1)
NADSYN1	NAD synthetase 1	11q13.4	1(0/0/1)

SNPs in LD with rs4944959 (count: 5) View in gBrowse (chr11:71153459..71171003 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs12800438	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1(0/0/1)	1.0[CEU]; 0.955[CHB]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 0.955[MEX]; 1.0[TSI]
rs11603330	downstream_gene_variant; intron_variant; upstream_gene_variant	1(0/0/1)	0.95[CEU]; 0.911[CHB]; 0.976[CHD]; 0.885[GIH]; 1.0[JPT]; 0.938[TSI]
rs7928249	intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/0/1)	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.923[GIH]; 1.0[JPT]; 0.969[TSI]
rs3750997	5_prime_UTR_variant; intron_variant; upstream_gene_variant	1(0/0/1)	0.95[CEU]; 0.885[GIH]; 0.908[TSI]
rs12422045	downstream_gene_variant; intron_variant; upstream_gene_variant	1(0/0/1)	0.95[CEU]; 0.911[CHB]; 0.976[CHD]; 0.885[GIH]; 1.0[JPT]; 0.938[TSI]