ADHDgene Database

SNP Report

Basic Info

Name	rs2731886 dbSNP Ensembl
Location	Chr5:36606009(Fwd)
Variant Alleles	A/C
Ancestral Allele	A
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000416645; ENST00000512374; ENST00000513903; ENST00000504121; ENST00000505202; ENST00000513646; ENST00000502864; ENST00000506725; ENST00000265113; ENST00000381918; ENST00000427100)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Turic D, 2005(a)	A/C		P-value=0.91 for pooled genotyping P-value=0.91 for pooled genotyping	not significantly associated with ADHD not significantly associated with ADHD	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC1A3	solute carrier family 1 (glial high affinity glutamate transporter), member 3	5p13	2(1/1/0)

SNPs in LD with rs2731886 (count: 13) View in gBrowse (chr5:36602563..36608165 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs4591778	intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.918[CEU]; 0.952[JPT]

rs_ID	Functional Annotation	r²[population]
rs13436644	intron_variant; nc_transcript_variant; upstream_gene_variant	0.918[CEU]; 0.955[CHB]; 0.954[CHD]; 0.897[GIH]; 1.0[JPT]; 0.912[MEX]; 0.932[TSI]
rs10078147	intron_variant; nc_transcript_variant; upstream_gene_variant	0.918[CEU]; 1.0[CHB]; 0.952[JPT]
rs2562576	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs2562575	upstream_gene_variant	1.0[CEU]; 0.952[JPT]
rs2562580	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs2562577	upstream_gene_variant	1.0[CEU]; 0.952[JPT]; 0.825[MEX]
rs2731884	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs2562578	upstream_gene_variant	1.0[CEU]; 1.0[JPT]
rs2731878	upstream_gene_variant	1.0[CEU]; 0.952[JPT]; 0.897[MEX]
rs2731883	upstream_gene_variant	1.0[CEU]; 1.0[JPT]
rs2562581	upstream_gene_variant	1.0[CEU]; 1.0[JPT]
rs2731879	upstream_gene_variant	1.0[CEU]; 0.952[JPT]