ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs2072743 dbSNP Ensembl
Location	ChrX:43599521(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000338702; ENST00000542639) upstream_gene_variant(ENST00000490604)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
MAOA	monoamine oxidase A	Xp11.4-p11.3	20(13/7/0)

Genes from other sources (count: 0)

SNPs in LD with rs2072743 (count: 19) View in gBrowse (chrX:43511497..43604841 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 19)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2283724	intron_variant; nc_transcript_variant	1(0/1/0)	0.944[CEU]; 0.858[CHB]; 0.903[CHD]; 0.933[JPT]
rs979605	intron_variant; upstream_gene_variant	2(0/2/0)	1.0[CHB]; 1.0[CHD]; 0.873[JPT]; 0.88[MEX]; 0.931[TSI]
rs5953210	upstream_gene_variant	1(1/0/0)	0.858[CHB]; 0.842[CHD]; 0.869[JPT]
rs2235185	intron_variant	1(1/0/0)	1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.824[MEX]; 0.928[TSI]
rs2072744	intron_variant; upstream_gene_variant	1(1/0/0)	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs2239448	intron_variant; upstream_gene_variant	3(3/0/0)	0.931[CHB]; 0.873[JPT]
rs3027407	3_prime_UTR_variant; downstream_gene_variant	3(2/1/0)	0.931[CHB]; 1.0[JPT]
rs6323	downstream_gene_variant; synonymous_variant	3(0/3/0)	1.0[CHB]; 0.967[CHD]; 1.0[JPT]; 0.824[MEX]; 0.931[TSI]
rs2235186	downstream_gene_variant; intron_variant	1(1/0/0)	1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.824[MEX]; 0.931[TSI]
rs2205718	intron_variant	1(0/1/0)	1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.824[MEX]; 0.927[TSI]
rs5905859	downstream_gene_variant; intron_variant	2(2/0/0)	0.911[ASW]; 0.944[CEU]; 1.0[CHB]; 0.965[CHD]; 1.0[GIH]; 0.933[JPT]; 0.97[LWK]; 1.0[MEX]; 0.98[MKK]; 1.0[TSI]; 0.841[YRI]
rs3788863	intron_variant; nc_transcript_variant	1(1/0/0)	0.858[CHB]; 0.842[CHD]; 0.933[JPT]
rs3788862	intron_variant; nc_transcript_variant	1(1/0/0)	0.858[CHB]; 0.869[JPT]
rs6610845	intron_variant; nc_transcript_variant	1(0/1/0)	1.0[CEU]; 1.0[CHB]; 0.967[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]
rs1137070	nc_transcript_variant; non_coding_exon_variant; synonymous_variant	4(3/1/0)	0.931[CHB]; 1.0[CHD]; 0.873[JPT]; 0.896[TSI]
rs3027400	downstream_gene_variant; intron_variant	3(3/0/0)	1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.824[MEX]; 0.931[TSI]
rs4570308	upstream_gene_variant	1(1/0/0)	0.858[CHB]; 0.869[JPT]
rs5905702	intron_variant; nc_transcript_variant	1(0/1/0)	0.858[CHB]; 0.842[CHD]; 0.869[JPT]; 0.824[MEX]
rs12843268	intron_variant; nc_transcript_variant	3(2/1/0)	1.0[CHB]; 0.934[CHD]; 0.842[GIH]; 1.0[JPT]; 0.855[LWK]; 1.0[MEX]; 0.931[TSI]; 0.943[YRI]

SNP Report

Literature-origin genes (count: 1)

Genes from other sources (count: 0)

Literature-origin SNPs (count: 19)

LD-proxies (count: 0)