SNP Report
Basic Info
Name |
rs1792284
dbSNP
Ensembl
|
Location |
Chr11:71134966(Fwd) |
Variant Alleles |
C/T |
Ancestral Allele |
C |
Functional Annotation |
downstream_gene_variant; upstream_gene_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000534795) upstream_gene_variant(ENST00000331301; ENST00000508543) |
No. of Studies |
0 (significant: 0; non-significant: 0; trend: 0) |
Source |
LD-proxy
|
SNP related studies (count: 0)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 7)
|
rs_ID |
Functional Annotation |
#studies(significant/non-significant/trend) |
r2[population] |
rs1630498
|
downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
0.811[ASW]; 1.0[CEU]; 0.903[CHB]; 0.878[CHD]; 0.978[GIH]; 0.908[JPT]; 0.955[LWK]; 0.833[MEX]; 0.986[MKK]; 1.0[TSI]; 0.959[YRI]
|
rs3750997
|
5_prime_UTR_variant; intron_variant; upstream_gene_variant |
1(0/0/1)
|
0.809[CEU]; 0.872[TSI]
|
rs736894
|
downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
1.0[CEU]; 0.865[CHB]; 0.856[CHD]; 0.955[GIH]; 0.826[JPT]; 0.833[MEX]; 1.0[TSI]
|
rs1790324
|
downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
1.0[CEU]; 0.865[CHB]; 0.856[CHD]; 0.955[GIH]; 0.953[JPT]; 0.832[MEX]; 1.0[TSI]
|
rs12422045
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1(0/0/1)
|
0.809[CEU]; 0.844[TSI]
|
rs7928249
|
intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
0.817[TSI]
|
rs11603330
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1(0/0/1)
|
0.809[CEU]; 0.844[TSI]
|
LD-proxies (count: 0)