ADHDgene Database

SNP Report

Basic Info

Name	rs1744062 dbSNP Ensembl
Location	Chr6:137309186(Fwd)
Variant Alleles	G/A
Ancestral Allele	A
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000418699; ENST00000432330) nc_transcript_variant(ENST00000418699; ENST00000432330)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Stergiakouli E., 2012	G/A	G	P=0.00000416, OR=0.75, 95% CI=0.67-0.85 P=0.00000416, OR=0.75, 95% CI=0.67-0.85	One of the top 20 independent SNP in this ADHD GWAS. One of the top 20 independent SNP in this ADHD GWAS.	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
IL20RA	interleukin 20 receptor, alpha	6q23.3	1(0/0/1)

SNPs in LD with rs1744062 (count: 10) View in gBrowse (chr6:137307421..137333851 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs941936	downstream_gene_variant; feature_truncation; nc_transcript_variant; non_coding_exon_variant	0.916[CEU]; 0.857[CHB]; 0.809[JPT]
rs1632514	intron_variant; nc_transcript_variant	0.831[YRI]
rs1475119	3_prime_UTR_variant; downstream_gene_variant	0.928[CHB]; 0.915[CHD]; 0.84[MEX]; 0.829[TSI]
rs9402865	intron_variant; nc_transcript_variant	0.858[CHB]; 0.878[CHD]; 0.84[MEX]; 0.81[TSI]
rs1775326	intron_variant; nc_transcript_variant	0.834[YRI]
rs1744053	intron_variant; nc_transcript_variant	0.869[LWK]; 0.834[YRI]
rs1629938	intron_variant; nc_transcript_variant	0.834[YRI]
rs4896228	downstream_gene_variant; intron_variant; nc_transcript_variant	0.928[CHB]; 0.915[CHD]; 0.84[MEX]; 0.829[TSI]
rs1744069	intron_variant; nc_transcript_variant	0.834[YRI]
rs9385780	intron_variant; nc_transcript_variant	0.96[CEU]; 1.0[CHB]; 1.0[JPT]