ADHDgene Database

SNP Report

Basic Info

Name	rs16870771 dbSNP Ensembl
Location	Chr4:21307781(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000515786) intron_variant(ENST00000382148; ENST00000447367; ENST00000382152; ENST00000509207; ENST00000515786; ENST00000515680) nc_transcript_variant(ENST00000515680) upstream_gene_variant(ENST00000382150)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Weissflog L., 2012		C	case-control test in aADHD sample: P=0.0349, OR=1.51, 95%CI=...... case-control test in aADHD sample: P=0.0349, OR=1.51, 95%CI=1.0298-2.2211 More...	Nominally significant association findings for KCNIP5 with a...... Nominally significant association findings for KCNIP5 with adult ADHD. More...	Significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
KCNIP4	Kv channel interacting protein 4	4p15.32	1(1/0/0)

SNPs in LD with rs16870771 (count: 10) View in gBrowse (chr4:21301546..21318171 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs4696975	NMD_transcript_variant; downstream_gene_variant; intron_variant	1.0[CHB]; 1.0[GIH]; 0.878[MEX]
rs13108412	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CHB]
rs983071	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[GIH]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]
rs13108702	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHB]
rs13120431	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs13118906	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 0.932[GIH]; 0.847[MEX]
rs12643751	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]
rs13101486	NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[GIH]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]
rs11734360	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[GIH]; 0.878[MEX]
rs2007762	NMD_transcript_variant; intron_variant; upstream_gene_variant	1.0[CHB]