ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs1326022 dbSNP Ensembl
Location	Chr20:54844025(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	nc_transcript_variant; non_coding_exon_variant.
Consequence to Transcript	nc_transcript_variant(ENST00000458731) non_coding_exon_variant(ENST00000458731)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (b)	A:G		GLM P-value=1.64E-05, meta-analysis P-value=0.1636 GLM P-value=1.64E-05, meta-analysis P-value=0.1636	One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset	Non-significant

SNP related genes (count: 0)

SNPs in LD with rs1326022 (count: 37) View in gBrowse (chr20:54836354..54932426 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 4)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs6014664	downstream_gene_variant	1(0/0/1)	0.931[CHB]; 0.953[CHD]; 1.0[JPT]; 0.819[TSI]
rs1980818	upstream_gene_variant	1(0/1/0)	0.931[CHB]; 1.0[CHD]; 1.0[JPT]
rs1326021	nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.954[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]
rs913000		1(0/1/0)	0.822[CEU]; 0.829[MEX]; 0.883[TSI]

LD-proxies (count: 33)

rs_ID	Functional Annotation	r²[population]
rs1326023	upstream_gene_variant	0.954[CEU]; 1.0[CHB]; 1.0[JPT]
rs2426614	upstream_gene_variant	0.809[CHD]
rs6099065	downstream_gene_variant	0.948[CEU]; 1.0[CHB]; 0.888[JPT]
rs6024783		0.901[CHD]; 1.0[JPT]
rs6099064	downstream_gene_variant	1.0[CHB]; 1.0[JPT]; 0.927[YRI]
rs6069689		0.857[CHB]; 0.953[CHD]; 1.0[JPT]; 0.815[TSI]
rs6024743	downstream_gene_variant	0.926[CHB]; 1.0[JPT]
rs6024763		0.855[CHB]; 1.0[JPT]
rs6069690		0.856[CHB]; 1.0[JPT]
rs2426607	intron_variant; nc_transcript_variant	0.821[CEU]; 0.953[CHD]; 1.0[JPT]; 0.837[TSI]
rs1326019	downstream_gene_variant	0.931[CHB]; 1.0[JPT]
rs6024739	upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs4811686	downstream_gene_variant	0.927[CHB]; 1.0[JPT]; 0.924[YRI]
rs8122798		0.813[CEU]; 1.0[JPT]
rs6123578	upstream_gene_variant	0.951[CHD]; 1.0[JPT]
rs6123575		0.857[CHB]; 1.0[JPT]
rs2094183	downstream_gene_variant	0.953[CEU]; 0.931[CHB]; 1.0[JPT]; 0.928[YRI]
rs2007072	intron_variant; nc_transcript_variant	0.821[CEU]; 1.0[JPT]
rs6127725		0.905[CHD]; 1.0[JPT]
rs6127723	intron_variant; nc_transcript_variant	0.953[CHD]; 1.0[JPT]
rs2182356		0.821[CEU]; 0.857[CHB]; 1.0[JPT]
rs1409224	upstream_gene_variant	0.954[CEU]; 1.0[CHB]; 1.0[JPT]
rs1926069	downstream_gene_variant	0.821[CEU]; 0.953[CHD]; 1.0[JPT]; 0.815[TSI]
rs2870731	downstream_gene_variant	0.823[JPT]
rs6024768		0.821[CEU]; 0.85[CHB]; 1.0[JPT]
rs6069692		0.821[CEU]; 0.85[CHB]; 1.0[JPT]
rs1409225	upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs6024751		1.0[JPT]
rs2426608	intron_variant; nc_transcript_variant	0.816[CEU]; 1.0[JPT]
rs2426606	intron_variant; nc_transcript_variant	0.821[CEU]; 0.953[CHD]; 1.0[JPT]; 0.837[TSI]
rs6127718		0.857[CHB]; 1.0[JPT]
rs2182355		0.857[CHB]; 1.0[JPT]
rs927809		0.833[CHB]; 0.948[CHD]; 0.827[TSI]