ADHDgene Database

SNP Report

Basic Info

Name	rs1242058 dbSNP Ensembl
Location	Chr3:143377573(Fwd)
Variant Alleles	C/A
Ancestral Allele	C
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000316549; ENST00000483124) nc_transcript_variant(ENST00000483124)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Brookes K, 2006	A/C		UNPHASED TDT P-value=0.038; WHAP TDT P-value=0.042 UNPHASED TDT P-value=0.038; WHAP TDT P-value=0.042	significant association was observed in both UNPHASED and WH...... significant association was observed in both UNPHASED and WHAP analyses More...	Significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC9A9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	3q23-q24	2(2/0/0)

SNPs in LD with rs1242058 (count: 6) View in gBrowse (chr3:143360568..143377573 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.


rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]
rs1242076	intron_variant; nc_transcript_variant	1(1/0/0)	0.88[CEU]; 1.0[CHB]; 0.904[JPT]

rs_ID	Functional Annotation	r²[population]
rs1242066	intron_variant; nc_transcript_variant	0.802[CEU]
rs12635131	intron_variant; nc_transcript_variant	1.0[CHB]; 0.952[CHD]; 0.907[JPT]
rs9822605	intron_variant; nc_transcript_variant	0.819[CEU]; 1.0[CHB]; 0.952[JPT]
rs1242064	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.952[GIH]; 0.904[JPT]; 0.868[MEX]; 1.0[TSI]
rs1242061	intron_variant; nc_transcript_variant	1.0[CEU]; 0.951[CHB]; 0.905[JPT]