ADHDgene Database

SNP Report

Basic Info

Name	rs1213371 dbSNP Ensembl
Location	Chr6:78180045(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Ickowicz A, 2007	T/C	T	TDT P-value=0.312 TDT P-value=0.312	No evidence for biased transmission No evidence for biased transmission	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
HTR1B	5-hydroxytryptamine (serotonin) receptor 1B	6q13	13(5/8/0)

SNPs in LD with rs1213371 (count: 47) View in gBrowse (chr6:78170062..78259610 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs11568817	5_prime_UTR_variant	1(0/1/0)	0.845[CEU]; 1.0[CHB]; 0.846[JPT]

rs_ID	Functional Annotation	r²[population]
rs2798956		0.913[CHD]
rs9361233	downstream_gene_variant	1.0[CHB]; 0.846[JPT]
rs1458440		0.913[CHD]
rs1213357	upstream_gene_variant	1.0[CHB]
rs2609072		0.865[CHD]
rs1778248		0.913[CHD]; 0.912[GIH]; 0.809[LWK]
rs1674212		0.865[CHD]
rs2609063		0.913[CHD]
rs1778245		0.913[CHD]
rs1777785		0.913[CHD]
rs1539626		0.837[CHD]
rs1343484		0.913[CHD]
rs1213373		1.0[CEU]; 1.0[CHB]; 0.823[JPT]; 1.0[YRI]
rs1213380		0.913[CHD]
rs1674203		0.913[CHD]
rs2798975		0.865[CHD]
rs10943468		0.913[CHD]
rs2798950		0.822[GIH]
rs1777759		0.913[CHD]
rs9352484		0.801[GIH]
rs1419162		0.874[CHD]; 0.912[GIH]
rs1777783		0.913[CHD]
rs1213366	upstream_gene_variant	1.0[ASW]; 0.923[CEU]; 1.0[CHB]; 1.0[CHD]; 0.846[JPT]; 0.935[LWK]; 0.957[MEX]; 0.828[MKK]; 1.0[TSI]; 1.0[YRI]
rs2798957		0.913[CHD]
rs1936158		0.814[MKK]; 1.0[YRI]
rs9361235	upstream_gene_variant	0.842[CEU]; 1.0[CHB]; 1.0[CHD]; 0.868[GIH]; 0.846[JPT]; 0.874[MEX]; 0.955[TSI]
rs17273700	upstream_gene_variant	0.845[CEU]; 1.0[CHB]; 0.846[JPT]
rs9343616		0.801[GIH]
rs2609067		0.865[CHD]
rs1778267		0.865[CHD]
rs1213381		0.86[CHD]
rs1419088		0.913[CHD]
rs1777784		0.913[CHD]
rs1213356	upstream_gene_variant	0.846[CHB]; 0.913[CHD]; 0.801[GIH]
rs2609060		0.913[CHD]
rs2798976		0.861[CHD]
rs2798509	downstream_gene_variant	0.913[CHD]
rs1228814	upstream_gene_variant	0.845[CEU]
rs2798506		0.801[GIH]
rs1361847	upstream_gene_variant	0.846[CHB]
rs1213369	upstream_gene_variant	1.0[YRI]
rs1623600		0.913[CHD]
rs1777753		0.913[CHD]; 0.912[GIH]
rs2320724		0.913[CHD]; 0.891[GIH]; 0.809[LWK]
rs1545665		0.865[CHD]
rs1625213		0.913[CHD]