ADHDgene Database

SNP Report

Basic Info

Name	rs1011061 dbSNP Ensembl
Location	Chr15:55987498(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000389286)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Wigg KG, 2008	T/C		TDT P-value=0.842, X²=0.04 TDT P-value=0.842, X²=0.04	no evidence for association no evidence for association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PRTG	protogenin	15q21.3	1(1/0/0)

SNPs in LD with rs1011061 (count: 21) View in gBrowse (chr15:55881745..56067866 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs1550326	intron_variant	1(0/1/0)	1.0[CHB]
rs530798	3_prime_UTR_variant	1(0/1/0)	1.0[CHB]; 1.0[CHD]
rs934886	intron_variant	1(0/1/0)	1.0[CHB]; 1.0[JPT]
rs3985768	intron_variant	1(0/1/0)	0.957[CEU]; 1.0[CHB]; 1.0[JPT]
rs9920546	downstream_gene_variant; intron_variant	1(0/1/0)	1.0[CHB]; 1.0[JPT]
rs11852746	intron_variant	1(0/1/0)	1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.801[MEX]

rs_ID	Functional Annotation	r²[population]
rs12906451		1.0[JPT]
rs8036481		0.843[ASW]; 1.0[CHB]; 1.0[JPT]; 0.865[TSI]
rs11857254	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CHB]
rs12438264		1.0[ASW]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.843[TSI]
rs4774217		1.0[CHB]; 1.0[CHD]
rs8028880	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs7175728		1.0[CHB]; 1.0[CHD]
rs12909497	upstream_gene_variant	1.0[CHB]
rs12914679		1.0[CHB]
rs491014	3_prime_UTR_variant	1.0[CHB]; 1.0[CHD]
rs12908232	intron_variant	0.96[CEU]; 1.0[CHB]; 1.0[JPT]
rs12915565		1.0[JPT]
rs7181481		1.0[CHB]
rs12899976	intron_variant	1.0[ASW]; 0.961[CEU]; 1.0[CHB]; 0.959[GIH]; 1.0[JPT]; 1.0[LWK]; 0.957[MEX]; 0.966[MKK]; 1.0[TSI]
rs4774222	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.915[MEX]; 1.0[TSI]