ADHDgene Database

SNP Report

Basic Info

Name	rs11179017 dbSNP Ensembl
Location	Chr12:72361408(Fwd)
Variant Alleles	A/T
Ancestral Allele	A
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000546576) intron_variant(ENST00000333850)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
TPH2	tryptophan hydroxylase 2	12q15	10(7/3/0)

SNPs in LD with rs11179017 (count: 5) View in gBrowse (chr12:72331362..72362265 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs1386492	downstream_gene_variant; intron_variant	1(0/1/0)	0.823[JPT]
rs1386488	NMD_transcript_variant; intron_variant	2(0/2/0)	1.0[JPT]
rs1386493	NMD_transcript_variant; intron_variant	4(2/2/0)	1.0[JPT]
rs6582072	NMD_transcript_variant; intron_variant	1(0/1/0)	1.0[JPT]
rs7963717	upstream_gene_variant	1(0/1/0)	0.912[MEX]