Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusunmethylated
Sequence name Brain_McrBC_05-16-03_BRMCH_6_C07
Chromosome 3
Start 89534766
End 89540201
Length 5435
CpG number 19
GC number 1929
Per GC 0.35
Obsexp 0.11
Related clones Brain_McrBC_05-16-03_BRMCH_6_C07
 
Overlapping Gene
Gene Symbol EPHA3
Gene Alias EPHA3, ETK, ETK1, HEK, HEK4, TYRO4
Ensembl ID ENSG00000044524
Details See Detail
 
Cancer Related with above Gene
Name Lung: Non-small cell carcinoma
Detail See Detail
 
Overlapping Repeat
Repeat name MER58B
Repeat class/family DNA/MER1_type
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name MER5A1
Repeat class/family DNA/MER1_type
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name LTR16B
Repeat class/family LTR/ERVL
 
Repeat name MIR
Repeat class/family SINE/MIR