Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusunmethylated
Sequence name Brain_McrBC_05-16-03_BRMCH2_8_F09
Chromosome 7
Start 33081232
End 33083984
Length 2752
CpG number 14
GC number 1096
Per GC 0.4
Obsexp 0.13
Related clones Brain_McrBC_05-16-03_BRMCH2_8_F09
 
Overlapping Gene
Gene Symbol BBS9
Gene Alias B1, C18, D1, MGC118917, PTHB1
Ensembl ID ENSG00000122507
Details See Detail
 
Ensembl ID ENSG00000210431
Details See Detail
 
Cancer Related with above Gene
Name Skin Melanoma
Alias "Cutaneous melanoma, Melanoma skin cancer"
Detail See Detail
 
Overlapping Repeat
Repeat name PRIMA4-int
Repeat class/family LTR/ERV1
 
Repeat name PRIMA4-int
Repeat class/family LTR/ERV1
 
Repeat name PRIMA4-int
Repeat class/family LTR/ERV1
 
Repeat name AluJb
Repeat class/family SINE/Alu
 
Repeat name (CA)n
Repeat class/family Simple_repeat
 
Repeat name PRIMA4-int
Repeat class/family LTR/ERV1
 
Repeat name AluJb
Repeat class/family SINE/Alu
 
Repeat name THE1D
Repeat class/family LTR/MaLR
 
Repeat name PRIMA4-int
Repeat class/family LTR/ERV1