Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusunmethylated
Sequence name Brain_McrBC_05-16-03_BRMCH_28_D09
Chromosome 8
Start 82824382
End 82827520
Length 3138
CpG number 12
GC number 1081
Per GC 0.34
Obsexp 0.13
Related clones Brain_McrBC_05-16-03_BRMCH_28_D09
 
Overlapping Gene
Gene Symbol CHMP4C
Gene Alias CHMP4C, MGC22825, SHAX3
Ensembl ID ENSG00000164695
Details See Detail
 
Overlapping Repeat
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name HAL1
Repeat class/family LINE/L1
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name L1M4c
Repeat class/family LINE/L1
 
Repeat name MIR3
Repeat class/family SINE/MIR
 
Repeat name L1M4c
Repeat class/family LINE/L1
 
Repeat name THE1-int
Repeat class/family LTR/MaLR
 
Repeat name L1M4c
Repeat class/family LINE/L1
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name L1MEd
Repeat class/family LINE/L1