Methylation Report |
| Sample |
| Source |
Columbia University |
| Tissue |
brain-cerebral cortex and cerebellum |
| Environment |
from a full-term human brain |
| Comment |
From the tissue bank of the Herbert Irving Comprehensive Cancer Center |
| Reference |
PMID:16365381 |
| Related methylation |
Find all methylation related to this sample |
| |
| Experiment |
|
Method
|
Paired end sequencing, enzyme digestion and analysis
|
| |
| Methylation Link to MethyView |
| Methylation type |
Methylation region
Methylation type introduction
|
| Methylation status | unmethylated |
|---|
|
Sequence name
|
Brain_McrBC_01-29-02_Plate003_Q283
|
| Chromosome |
11 |
| Start |
101120627 |
| End |
101125411 |
| Length |
4784 |
| CpG number |
21 |
| GC number |
1545 |
| Per GC |
0.32 |
| Obsexp |
0.17 |
| Related clones |
Brain_McrBC_01-29-02_Plate003_Q283
|
| |
| Overlapping Gene |
| Gene Symbol |
KIAA1377 |
| Gene Alias |
KIAA1377 |
| Ensembl ID |
ENSG00000110318 |
| Details |
See Detail |
| |
| Gene Symbol |
TRPC6 |
| Gene Alias |
FLJ11098, FLJ14863, FSGS2, TRP6, TRPC6 |
| Ensembl ID |
ENSG00000137672 |
| Details |
See Detail |
| |
| Overlapping Repeat |
| Repeat name |
L1M5
|
| Repeat class/family |
LINE/L1
|
| |
| Repeat name |
L1PA5
|
| Repeat class/family |
LINE/L1
|
| |
| Repeat name |
AT_rich
|
| Repeat class/family |
Low_complexity
|
| |
| Repeat name |
FRAM
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
L1M5
|
| Repeat class/family |
LINE/L1
|
| |
| Repeat name |
AT_rich
|
| Repeat class/family |
Low_complexity
|
| |
| Repeat name |
L1ME3B
|
| Repeat class/family |
LINE/L1
|
| |
| Repeat name |
AluJo
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
Alu
|
| Repeat class/family |
SINE/Alu
|
| |
| |
