Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusunmethylated
Sequence name Brain_McrBC_01-29-02_Plate003_Q283
Chromosome 11
Start 101120627
End 101125411
Length 4784
CpG number 21
GC number 1545
Per GC 0.32
Obsexp 0.17
Related clones Brain_McrBC_01-29-02_Plate003_Q283
 
Overlapping Gene
Gene Symbol KIAA1377
Gene Alias KIAA1377
Ensembl ID ENSG00000110318
Details See Detail
 
Gene Symbol TRPC6
Gene Alias FLJ11098, FLJ14863, FSGS2, TRP6, TRPC6
Ensembl ID ENSG00000137672
Details See Detail
 
Overlapping Repeat
Repeat name L1M5
Repeat class/family LINE/L1
 
Repeat name L1PA5
Repeat class/family LINE/L1
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name FRAM
Repeat class/family SINE/Alu
 
Repeat name L1M5
Repeat class/family LINE/L1
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name L1ME3B
Repeat class/family LINE/L1
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name Alu
Repeat class/family SINE/Alu