Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusunmethylated
Sequence name Brain_McrBC_05-16-03_BRMCH_11_F09
Chromosome 7
Start 25340889
End 25345296
Length 4407
CpG number 25
GC number 1769
Per GC 0.4
Obsexp 0.14
Related clones Brain_McrBC_05-16-03_BRMCH_11_F09
 
Overlapping Gene
Gene Symbol NFE2L3
Gene Alias NFE2L3, NRF3
Ensembl ID ENSG00000050344
Details See Detail
 
Gene Symbol NPVF
Gene Alias C7ORF9, NPVF, RFRP
Ensembl ID ENSG00000105954
Details See Detail
 
Overlapping Repeat
Repeat name MER99
Repeat class/family DNA
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name GA-rich
Repeat class/family Low_complexity
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name MLT1H2
Repeat class/family LTR/MaLR
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name L1PA16
Repeat class/family LINE/L1