Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusunmethylated
Sequence name Brain_McrBC_05-16-03_BRMCH_3_A10
Chromosome 5
Start 92861884
End 92865036
Length 3152
CpG number 13
GC number 1151
Per GC 0.37
Obsexp 0.12
Related clones Brain_McrBC_05-16-03_BRMCH_3_A10
 
Overlapping Gene
Gene Symbol NR2F1
Gene Alias COUP-TFI, EAR-3, EAR3, ERBAL3, NR2F1, NR2F2, SVP44, TCFCOUP1, TFCOUP1
Ensembl ID ENSG00000175745
Details See Detail
 
Gene Symbol ARRDC3
Gene Alias ARRDC3, KIAA1376, TLIMP
Ensembl ID ENSG00000113369
Details See Detail
 
Overlapping Repeat
Repeat name (TTG)n
Repeat class/family Simple_repeat
 
Repeat name Tigger1
Repeat class/family DNA/MER2_type
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name Tigger1
Repeat class/family DNA/MER2_type
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name Tigger1
Repeat class/family DNA/MER2_type
 
Repeat name L1MC4a
Repeat class/family LINE/L1
 
Repeat name MER68
Repeat class/family LTR/ERVL
 
Repeat name L1MC4a
Repeat class/family LINE/L1