Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE10_7_D04
Chromosome 22
Start 28104619
End 28113843
Length 9224
CpG number 121
GC number 4372
Per GC 0.47
Obsexp 0.23
Related clones Brain_RE_05-16-03_BRRE10_7_D04
 
Overlapping Gene
Gene Symbol AP1B1
Gene Alias ADTB1, AP105A, AP1B1, BAM22, CLAPB2
Ensembl ID ENSG00000100280
Details See Detail
 
Overlapping Repeat
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name AluSg
Repeat class/family SINE/Alu
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name AluY
Repeat class/family SINE/Alu
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name AluY
Repeat class/family SINE/Alu