Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE10_2_E02
Chromosome 3
Start 125704031
End 125711459
Length 7428
CpG number 39
GC number 2984
Per GC 0.4
Obsexp 0.13
Related clones Brain_RE_05-16-03_BRRE10_2_E02
 
Overlapping Gene
Gene Symbol HAPIP
Gene Alias KALRN, DUET, DUO, FLJ16443, HAPIP, KALRN, TRAD
Ensembl ID ENSG00000160145
Details See Detail
 
Overlapping Repeat
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name MIR3
Repeat class/family SINE/MIR
 
Repeat name L1ME3B
Repeat class/family LINE/L1
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name AluJb
Repeat class/family SINE/Alu