Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusunmethylated
Sequence name Brain_McrBC_05-16-03_BRMCH_24_H11
Chromosome 7
Start 100271166
End 100273454
Length 2288
CpG number 61
GC number 1266
Per GC 0.55
Obsexp 0.35
Related clones Brain_McrBC_05-16-03_BRMCH_24_H11
 
Overlapping Gene
Gene Symbol EPHB4
Gene Alias EPHB4, HTK, MYK1, TYRO11
Ensembl ID ENSG00000196411
Details See Detail
 
Gene Symbol SLC12A9
Gene Alias CIP1, FLJ46905, SLC12A9
Ensembl ID ENSG00000146828
Details See Detail
 
Cancer Related with above Gene
Name Ovary: Epithelial tumors
Detail See Detail
 
Name Gastric (Stomach) tumors
Alias "gastric cancer, stomach cancer"
Detail See Detail
 
Name Skin Melanoma
Alias "Cutaneous melanoma, Melanoma skin cancer"
Detail See Detail
 
Name Lung: Non-small cell carcinoma
Detail See Detail
 
Overlapping Repeat
Repeat name FLAM_C
Repeat class/family SINE/Alu
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name AluSc
Repeat class/family SINE/Alu
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name AluY
Repeat class/family SINE/Alu