Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusunmethylated
Sequence name Brain_McrBC_05-16-03_BRMCH2_5_F06
Chromosome 4
Start 95923963
End 95926752
Length 2789
CpG number 10
GC number 1123
Per GC 0.4
Obsexp 0.09
Related clones Brain_McrBC_05-16-03_BRMCH2_5_F06
 
Overlapping Gene
Gene Symbol BMPR1B
Gene Alias ALK-6, ALK6, BMPR1B, CDW293
Ensembl ID ENSG00000138696
Details See Detail
 
Cancer Related with above Gene
Name Gastric (Stomach) tumors
Alias "gastric cancer, stomach cancer"
Detail See Detail
 
Name Skin Melanoma
Alias "Cutaneous melanoma, Melanoma skin cancer"
Detail See Detail
 
Overlapping Repeat
Repeat name AluY
Repeat class/family SINE/Alu
 
Repeat name FLAM_C
Repeat class/family SINE/Alu
 
Repeat name (TTTA)n
Repeat class/family Simple_repeat
 
Repeat name HERV16
Repeat class/family LTR/ERVL
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name HERV16
Repeat class/family LTR/ERVL
 
Repeat name LTR16D
Repeat class/family LTR/ERVL
 
Repeat name L1MB7
Repeat class/family LINE/L1