Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE5_9_C04
Chromosome 6
Start 26023102
End 26028468
Length 5366
CpG number 55
GC number 2234
Per GC 0.42
Obsexp 0.24
Related clones Brain_RE_05-16-03_BRRE5_9_C04
 
Overlapping Gene
Gene Symbol SLC17A2
Gene Alias MGC138238, NPT3, SLC17A2
Ensembl ID ENSG00000112337
Details See Detail
 
Overlapping Repeat
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name MER112
Repeat class/family DNA/MER1_type
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name AluSg
Repeat class/family SINE/Alu
 
Repeat name AluY
Repeat class/family SINE/Alu
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name (TA)n
Repeat class/family Simple_repeat