Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE10_4_H09
Chromosome 4
Start 83458229
End 83469180
Length 10951
CpG number 105
GC number 4384
Per GC 0.4
Obsexp 0.24
Related clones Brain_RE_05-16-03_BRRE10_4_H09
 
Overlapping Gene
Gene Symbol ENOPH1
Ensembl ID ENSG00000145293
Details See Detail
 
Gene Symbol RASGEF1B
Gene Alias FLJ31695, GPIG4, MGC46251, RASGEF1B
Ensembl ID ENSG00000138670
Details See Detail
 
Overlapping Repeat
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name (CAAAA)n
Repeat class/family Simple_repeat
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name THE1A
Repeat class/family LTR/MaLR
 
Repeat name L1ME2
Repeat class/family LINE/L1
 
Repeat name L1PA5
Repeat class/family LINE/L1
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name L1ME2
Repeat class/family LINE/L1
 
Repeat name AluY
Repeat class/family SINE/Alu
 
Repeat name HAL1
Repeat class/family LINE/L1
 
Repeat name AluJb
Repeat class/family SINE/Alu
 
Repeat name AluSq
Repeat class/family SINE/Alu
 
Repeat name L1ME2
Repeat class/family LINE/L1
 
Repeat name L1MEd
Repeat class/family LINE/L1
 
Repeat name L1ME2
Repeat class/family LINE/L1
 
Repeat name MER2
Repeat class/family DNA/MER2_type
 
Repeat name Alu
Repeat class/family SINE/Alu
 
Repeat name FAM
Repeat class/family SINE/Alu
 
Repeat name L1M
Repeat class/family LINE/L1
 
Repeat name (TTTG)n
Repeat class/family Simple_repeat
 
Repeat name L1MC1
Repeat class/family LINE/L1
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name AluY
Repeat class/family SINE/Alu
 
Repeat name AluY
Repeat class/family SINE/Alu
 
Repeat name L1MB5
Repeat class/family LINE/L1
 
Repeat name MER7A
Repeat class/family DNA/MER2_type
 
Repeat name MLT1K-int
Repeat class/family LTR/MaLR
 
Repeat name L1ME2
Repeat class/family LINE/L1
 
Repeat name AluSg
Repeat class/family SINE/Alu
 
Repeat name L1MC5
Repeat class/family LINE/L1
 
Repeat name L1ME2
Repeat class/family LINE/L1
 
Repeat name L2
Repeat class/family LINE/L2