Methylation Report

Sample
Source BIG/UHN
Tissue cell line
Comment from the Sanger Centre, UK.
Reference PMID:8012384
Related methylation Find all methylation related to this sample
 
Experiment
Method        Construct MBD column and sequencing
 
Methylation      Link to MethyView
Methylation type CpG Island type II    Related CGI Prediction       Methylation type introduction
Sequence name CpGICLT016948
Chromosome 20
Start 41250505
End 41250737
Length 233
CpG number 12
GC number 122
Per GC 0.52
Obsexp 0.79
Related clones UHNhscpg0014577
Clone019761_3
Clone004012
Clone012543
Clone004056_5
 
Overlapping Gene
Gene Symbol PTPRT
Gene Alias KIAA0283, PTPRT, RPTPRHO
Ensembl ID ENSG00000196090
Details See Detail
 
Cancer Related with above Gene
Name Lung: small cell cancer
Detail See Detail
 
Name Skin Melanoma
Alias "Cutaneous melanoma, Melanoma skin cancer"
Detail See Detail
 
Name Lung: Non-small cell carcinoma
Detail See Detail
 
Overlapping Repeat
Repeat name CT-rich
Repeat class/family Low_complexity