Methylation Report |
| Sample |
| Source |
Columbia University |
| Tissue |
brain-cerebral cortex and cerebellum |
| Environment |
from a full-term human brain |
| Comment |
From the tissue bank of the Herbert Irving Comprehensive Cancer Center |
| Reference |
PMID:16365381 |
| Related methylation |
Find all methylation related to this sample |
| |
| Experiment |
|
Method
|
Paired end sequencing, enzyme digestion and analysis
|
| |
| Methylation Link to MethyView |
| Methylation type |
Methylation region
Methylation type introduction
|
| Methylation status | methylated |
|---|
|
Sequence name
|
Brain_RE_05-16-03_BRRE10_17_F04
|
| Chromosome |
4 |
| Start |
5744934 |
| End |
5753799 |
| Length |
8865 |
| CpG number |
153 |
| GC number |
4300 |
| Per GC |
0.49 |
| Obsexp |
0.29 |
| Related clones |
Brain_RE_05-16-03_BRRE10_17_F04
|
| |
| Overlapping Gene |
| Gene Symbol |
EVC2 |
| Gene Alias |
EVC2, LBN |
| Ensembl ID |
ENSG00000173040 |
| Details |
See Detail |
| |
| Overlapping Repeat |
| Repeat name |
L2
|
| Repeat class/family |
LINE/L2
|
| |
| Repeat name |
AluYb8
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
MLT1C
|
| Repeat class/family |
LTR/MaLR
|
| |
| Repeat name |
AluSc
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
MIR3
|
| Repeat class/family |
SINE/MIR
|
| |
| Repeat name |
L1MC2
|
| Repeat class/family |
LINE/L1
|
| |
| Repeat name |
L1M3
|
| Repeat class/family |
LINE/L1
|
| |
| Repeat name |
L3
|
| Repeat class/family |
LINE/CR1
|
| |
| Repeat name |
AluSx
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
FLAM_C
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
L2
|
| Repeat class/family |
LINE/L2
|
| |
| Repeat name |
MIRb
|
| Repeat class/family |
SINE/MIR
|
| |
| Repeat name |
MLT1D
|
| Repeat class/family |
LTR/MaLR
|
| |
| Repeat name |
MLT1D
|
| Repeat class/family |
LTR/MaLR
|
| |
| Repeat name |
AluY
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
MIRb
|
| Repeat class/family |
SINE/MIR
|
| |
| Repeat name |
MIRb
|
| Repeat class/family |
SINE/MIR
|
| |
| Repeat name |
MIRb
|
| Repeat class/family |
SINE/MIR
|
| |
| Repeat name |
AluJo
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
MIRb
|
| Repeat class/family |
SINE/MIR
|
| |
| Repeat name |
MLT1K
|
| Repeat class/family |
LTR/MaLR
|
| |
| |
