Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE10_15_F04
Chromosome 20
Start 40927121
End 40935547
Length 8426
CpG number 50
GC number 3574
Per GC 0.42
Obsexp 0.13
Related clones Brain_RE_05-16-03_BRRE10_15_F04
 
Overlapping Gene
Gene Symbol PTPRT
Gene Alias KIAA0283, PTPRT, RPTPRHO
Ensembl ID ENSG00000196090
Details See Detail
 
Cancer Related with above Gene
Name Lung: small cell cancer
Detail See Detail
 
Name Skin Melanoma
Alias "Cutaneous melanoma, Melanoma skin cancer"
Detail See Detail
 
Name Lung: Non-small cell carcinoma
Detail See Detail
 
Overlapping Repeat
Repeat name MLT1A1
Repeat class/family LTR/MaLR
 
Repeat name L1MB2
Repeat class/family LINE/L1
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name MLT1A1-int
Repeat class/family LTR/MaLR
 
Repeat name Tigger3(Golem)
Repeat class/family DNA/MER2_type
 
Repeat name MIR3
Repeat class/family SINE/MIR
 
Repeat name L1MB2
Repeat class/family LINE/L1
 
Repeat name MIR3
Repeat class/family SINE/MIR
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name Tigger3(Golem)
Repeat class/family DNA/MER2_type
 
Repeat name (T)n
Repeat class/family Simple_repeat
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name MLT1A1
Repeat class/family LTR/MaLR
 
Repeat name MER5A
Repeat class/family DNA/MER1_type
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name LTR33A
Repeat class/family LTR/ERVL
 
Repeat name L1MB2
Repeat class/family LINE/L1
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name MLT1A1
Repeat class/family LTR/MaLR