Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE10_3_G08
Chromosome 6
Start 90142674
End 90151698
Length 9024
CpG number 100
GC number 3735
Per GC 0.41
Obsexp 0.26
Related clones Brain_RE_05-16-03_BRRE10_3_G08
 
Overlapping Gene
Gene Symbol RRAGD
Gene Alias BA11D8.2.1, DKFZP761H171, RAGD, RRAGD
Ensembl ID ENSG00000025039
Details See Detail
 
Overlapping Repeat
Repeat name (TA)n
Repeat class/family Simple_repeat
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name FRAM
Repeat class/family SINE/Alu
 
Repeat name AluY
Repeat class/family SINE/Alu
 
Repeat name AluY
Repeat class/family SINE/Alu
 
Repeat name FAM
Repeat class/family SINE/Alu
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name AluSp
Repeat class/family SINE/Alu
 
Repeat name Tigger2a
Repeat class/family DNA/MER2_type
 
Repeat name AluSc
Repeat class/family SINE/Alu
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name MER58A
Repeat class/family DNA/MER1_type
 
Repeat name L1ME3B
Repeat class/family LINE/L1
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name L1ME1
Repeat class/family LINE/L1
 
Repeat name (TG)n
Repeat class/family Simple_repeat
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name L1ME3B
Repeat class/family LINE/L1
 
Repeat name AluSg
Repeat class/family SINE/Alu
 
Repeat name FLAM_A
Repeat class/family SINE/Alu