Methylation Report |
| Sample |
| Source |
Columbia University |
| Tissue |
brain-cerebral cortex and cerebellum |
| Environment |
from a full-term human brain |
| Comment |
From the tissue bank of the Herbert Irving Comprehensive Cancer Center |
| Reference |
PMID:16365381 |
| Related methylation |
Find all methylation related to this sample |
| |
| Experiment |
|
Method
|
Paired end sequencing, enzyme digestion and analysis
|
| |
| Methylation Link to MethyView |
| Methylation type |
Methylation region
Methylation type introduction
|
| Methylation status | methylated |
|---|
|
Sequence name
|
Brain_RE_05-16-03_BRRE10_3_G08
|
| Chromosome |
6 |
| Start |
90142674 |
| End |
90151698 |
| Length |
9024 |
| CpG number |
100 |
| GC number |
3735 |
| Per GC |
0.41 |
| Obsexp |
0.26 |
| Related clones |
Brain_RE_05-16-03_BRRE10_3_G08
|
| |
| Overlapping Gene |
| Gene Symbol |
RRAGD |
| Gene Alias |
BA11D8.2.1, DKFZP761H171, RAGD, RRAGD |
| Ensembl ID |
ENSG00000025039 |
| Details |
See Detail |
| |
| Overlapping Repeat |
| Repeat name |
(TA)n
|
| Repeat class/family |
Simple_repeat
|
| |
| Repeat name |
AluJo
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
AluJo
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
FRAM
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
AluY
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
AluY
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
FAM
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
MIR
|
| Repeat class/family |
SINE/MIR
|
| |
| Repeat name |
AluSp
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
Tigger2a
|
| Repeat class/family |
DNA/MER2_type
|
| |
| Repeat name |
AluSc
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
MIR
|
| Repeat class/family |
SINE/MIR
|
| |
| Repeat name |
MER58A
|
| Repeat class/family |
DNA/MER1_type
|
| |
| Repeat name |
L1ME3B
|
| Repeat class/family |
LINE/L1
|
| |
| Repeat name |
AluJo
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
L1ME1
|
| Repeat class/family |
LINE/L1
|
| |
| Repeat name |
(TG)n
|
| Repeat class/family |
Simple_repeat
|
| |
| Repeat name |
MIR
|
| Repeat class/family |
SINE/MIR
|
| |
| Repeat name |
L1ME3B
|
| Repeat class/family |
LINE/L1
|
| |
| Repeat name |
AluSg
|
| Repeat class/family |
SINE/Alu
|
| |
| Repeat name |
FLAM_A
|
| Repeat class/family |
SINE/Alu
|
| |
| |
