Methylation Report

Sample
Name UACC2648
Source MethDB_3228
Sex female
Tissue breast - UACC2648 cells
State culture cells
Phenotype tumor - adenocarcinoma
Comment BRCA1 expression was measured by RT-PCR and BRCA1 mRNA levels were normalized to mRNA levels of histone 3.3 (a cell-cycle independent ubiquitously-expressed histone variant). The normal HMEC expressed the highest levels of BRCA1 mRNA and are used as reference. The expression of BRCA1 mRNA in UACC2648 is fourfold less than the normal HMEC.
Reference PMID:9778046
Related methylation Find all methylation related to this sample
 
Experiment
Method        Averaged Bisulfite Seq. data from single clones
 
Methylation      Link to MethyView
Methylation type Methylation profile       Methylation type introduction
Methylation status
Sequence name MethDB_sequence_102     Link to MethDB
Chromosome 17
Start 38530673
End 38530768
Length 95
CpG number 6
GC number 56
Per GC 0.5895
Obsexp 1.0197
Related clones Related Profile/Pattern
 
Overlapping Gene
Gene Symbol BRCA1
Gene Alias BRCA1, BRCAI, BRCC1, IRIS, PSCP, RNF53
Ensembl ID ENSG00000012048
Details See Detail
 
Cancer Related with above Gene
Name Ovary: Epithelial tumors
Detail See Detail
 
Name Prostate tumors
Detail See Detail
 
Name Bladder: Urothelial carcinomas
Detail See Detail
 
Name Breast: Secretory Ductal Carcinoma
Alias Secretory Breast Cancer
Detail See Detail
 
Name Overview of ovarian tumors
Detail See Detail
 
Name Overview of breast tumors
Detail See Detail