Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE10_7_H09
Chromosome 1
Start 209978410
End 209985106
Length 6696
CpG number 50
GC number 2821
Per GC 0.42
Obsexp 0.17
Related clones Brain_RE_05-16-03_BRRE10_7_H09
 
Overlapping Gene
Gene Symbol LPGAT1
Gene Alias FAM34A, FAM34A1, LPGAT1
Ensembl ID ENSG00000123684
Details See Detail
 
Overlapping Repeat
Repeat name MER63
Repeat class/family DNA/AcHobo
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name MLT1H
Repeat class/family LTR/MaLR
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name AluSg
Repeat class/family SINE/Alu
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name AluJb
Repeat class/family SINE/Alu
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name Charlie2
Repeat class/family DNA/MER1_type
 
Repeat name MER63
Repeat class/family DNA/AcHobo