Methylation Report |
Sample |
Source |
Columbia University |
Tissue |
brain-cerebral cortex and cerebellum |
Environment |
from a full-term human brain |
Comment |
From the tissue bank of the Herbert Irving Comprehensive Cancer Center |
Reference |
PMID:16365381 |
Related methylation |
Find all methylation related to this sample |
|
Experiment |
Method
|
Paired end sequencing, enzyme digestion and analysis
|
|
Methylation Link to MethyView |
Methylation type |
Methylation region
Methylation type introduction
|
Methylation status | methylated |
Sequence name
|
Brain_RE_05-16-03_BRRE10_5_F12
|
Chromosome |
9 |
Start |
20264913 |
End |
20272581 |
Length |
7668 |
CpG number |
50 |
GC number |
3256 |
Per GC |
0.42 |
Obsexp |
0.14 |
Related clones |
Brain_RE_05-16-03_BRRE10_5_F12
|
|
Overlapping Gene |
Ensembl ID |
ENSG00000200775 |
Details |
See Detail |
|
Gene Symbol |
SLC24A2 |
Gene Alias |
NCKX2, SLC24A2 |
Ensembl ID |
ENSG00000155886 |
Details |
See Detail |
|
Overlapping Repeat |
Repeat name |
L1ME3A
|
Repeat class/family |
LINE/L1
|
|
Repeat name |
THE1C-int
|
Repeat class/family |
LTR/MaLR
|
|
Repeat name |
AluJb
|
Repeat class/family |
SINE/Alu
|
|
Repeat name |
THE1C
|
Repeat class/family |
LTR/MaLR
|
|
Repeat name |
THE1B
|
Repeat class/family |
LTR/MaLR
|
|
Repeat name |
L1ME3A
|
Repeat class/family |
LINE/L1
|
|
Repeat name |
THE1C-int
|
Repeat class/family |
LTR/MaLR
|
|
Repeat name |
AluSq
|
Repeat class/family |
SINE/Alu
|
|
Repeat name |
LTR16A1
|
Repeat class/family |
LTR/ERVL
|
|
Repeat name |
L1PA5
|
Repeat class/family |
LINE/L1
|
|
Repeat name |
MIRb
|
Repeat class/family |
SINE/MIR
|
|
Repeat name |
MLT1D
|
Repeat class/family |
LTR/MaLR
|
|
|