Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE10_5_F12
Chromosome 9
Start 20264913
End 20272581
Length 7668
CpG number 50
GC number 3256
Per GC 0.42
Obsexp 0.14
Related clones Brain_RE_05-16-03_BRRE10_5_F12
 
Overlapping Gene
Ensembl ID ENSG00000200775
Details See Detail
 
Gene Symbol SLC24A2
Gene Alias NCKX2, SLC24A2
Ensembl ID ENSG00000155886
Details See Detail
 
Overlapping Repeat
Repeat name L1ME3A
Repeat class/family LINE/L1
 
Repeat name THE1C-int
Repeat class/family LTR/MaLR
 
Repeat name AluJb
Repeat class/family SINE/Alu
 
Repeat name THE1C
Repeat class/family LTR/MaLR
 
Repeat name THE1B
Repeat class/family LTR/MaLR
 
Repeat name L1ME3A
Repeat class/family LINE/L1
 
Repeat name THE1C-int
Repeat class/family LTR/MaLR
 
Repeat name AluSq
Repeat class/family SINE/Alu
 
Repeat name LTR16A1
Repeat class/family LTR/ERVL
 
Repeat name L1PA5
Repeat class/family LINE/L1
 
Repeat name MIRb
Repeat class/family SINE/MIR
 
Repeat name MLT1D
Repeat class/family LTR/MaLR