Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE10_4_G07
Chromosome 6
Start 91855844
End 91863643
Length 7799
CpG number 45
GC number 2818
Per GC 0.36
Obsexp 0.18
Related clones Brain_RE_05-16-03_BRRE10_4_G07
 
Overlapping Gene
Gene Symbol MAP3K7
Gene Alias MAP3K7, TAK1, TGF1A
Ensembl ID ENSG00000135341
Details See Detail
 
Ensembl ID ENSG00000209145
Details See Detail
 
Overlapping Repeat
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name GA-rich
Repeat class/family Low_complexity
 
Repeat name (A)n
Repeat class/family Simple_repeat
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name L2
Repeat class/family LINE/L2
 
Repeat name L1MB3
Repeat class/family LINE/L1
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name MIRm
Repeat class/family SINE/MIR