Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE5_4_E08
Chromosome 7
Start 125798342
End 125805067
Length 6725
CpG number 30
GC number 2420
Per GC 0.36
Obsexp 0.14
Related clones Brain_RE_05-16-03_BRRE5_4_E08
 
Overlapping Gene
Gene Symbol ARF5
Gene Alias ARF5
Ensembl ID ENSG00000004059
Details See Detail
 
Gene Symbol POT1
Gene Alias DKFZP586D211, HPOT1, POT1
Ensembl ID ENSG00000128513
Details See Detail
 
Overlapping Repeat
Repeat name L1P4
Repeat class/family LINE/L1
 
Repeat name polypurine
Repeat class/family Low_complexity
 
Repeat name MLT1D
Repeat class/family LTR/MaLR
 
Repeat name L1PREC2
Repeat class/family LINE/L1
 
Repeat name AluSp
Repeat class/family SINE/Alu
 
Repeat name polypurine
Repeat class/family Low_complexity
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name L1PA5
Repeat class/family LINE/L1
 
Repeat name MLT1D
Repeat class/family LTR/MaLR
 
Repeat name L1P4
Repeat class/family LINE/L1
 
Repeat name MER65A
Repeat class/family LTR/ERV1
 
Repeat name THE1C
Repeat class/family LTR/MaLR
 
Repeat name (TA)n
Repeat class/family Simple_repeat
 
Repeat name (GAAA)n
Repeat class/family Simple_repeat
 
Repeat name (TG)n
Repeat class/family Simple_repeat