Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_01-29-02_Plate001_Q328
Chromosome 19
Start 13638273
End 13640798
Length 2525
CpG number 49
GC number 1259
Per GC 0.5
Obsexp 0.31
Related clones Brain_RE_01-29-02_Plate001_Q328
 
Overlapping Gene
Gene Symbol CCDC130
Gene Alias CCDC130, MGC10471
Ensembl ID ENSG00000104957
Details See Detail
 
Gene Symbol CACNA1A
Gene Alias APCA, CACNA1A, CACNL1A4, CAV2.1, EA2, FHM, HPCA, MHP, MHP1, SCA6
Ensembl ID ENSG00000141837
Details See Detail
 
Overlapping Repeat
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name (TTTA)n
Repeat class/family Simple_repeat
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name AluSg/x
Repeat class/family SINE/Alu
 
Repeat name AluJb
Repeat class/family SINE/Alu
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name AluSx
Repeat class/family SINE/Alu
 
Repeat name AluSg/x
Repeat class/family SINE/Alu
 
Repeat name MLT1K
Repeat class/family LTR/MaLR
 
Repeat name Charlie3
Repeat class/family DNA/MER1_type
 
Repeat name MER54A
Repeat class/family LTR/ERVL