Methylation Report

Sample
Source Columbia University
Tissue brain-cerebral cortex and cerebellum
Environment from a full-term human brain
Comment From the tissue bank of the Herbert Irving Comprehensive Cancer Center
Reference PMID:16365381
Related methylation Find all methylation related to this sample
 
Experiment
Method        Paired end sequencing, enzyme digestion and analysis
 
Methylation      Link to MethyView
Methylation type Methylation region       Methylation type introduction
Methylation statusmethylated
Sequence name Brain_RE_05-16-03_BRRE10_13_C01
Chromosome 6
Start 47554861
End 47562694
Length 7833
CpG number 48
GC number 2841
Per GC 0.36
Obsexp 0.19
Related clones Brain_RE_05-16-03_BRRE10_13_C01
 
Overlapping Gene
Gene Symbol CD2AP
Gene Alias CD2AP, CMS, DKFZP586H0519
Ensembl ID ENSG00000198087
Details See Detail
 
Overlapping Repeat
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name Tigger3b
Repeat class/family DNA/MER2_type
 
Repeat name AT_rich
Repeat class/family Low_complexity
 
Repeat name MIR
Repeat class/family SINE/MIR
 
Repeat name AluJo
Repeat class/family SINE/Alu
 
Repeat name (TTTG)n
Repeat class/family Simple_repeat
 
Repeat name AluY
Repeat class/family SINE/Alu
 
Repeat name AluSx
Repeat class/family SINE/Alu